Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g05344 ATGGGACTTCATTACAGAAAGTTGTTATCTGACTCTGACTACTGTGACATTTTCTGTCATGTAGATAAGTCTTGTTCATCAGATTGTGATGATTGCATCAAGAGCTGCAACTATCCATCATCACATCACTCCAAAATCAAAACTTCCACTTACTTGATTATCAGTTTTTCTCTTGCAGCTACAGCTTTCTTTGTTGTGTGCTGCTATGCCATATATGTCAAGTTTTTCTCTGGTAGGAACAGGTCAAGGAGGAGGGTTTTATCACAGCAACAAACAGAAGATGATGATTTTGTTGATGAAGAACATGGCCCTATGGTGGACCATCCCATATGGTACATACGCACCACTGGTCTCCAACAATCAATTATCACTGCCATCACAGTTTGTAAGTATAAAAAAGGTGAAGGCTTGATTGAAGGAACAGAGTGTTCTGTTTGTTTGAGTGAGTTTCAAGAGGATGAGAATCTCAGACTTTTGCCAAAGTGTAACCATGCTTTCCATTTACCTTGTATTGACACTTGGCTTAGATCACATACCAATTGCCCCATGTGTAGGGCTCCCATTGTTACTAACCCTGCAAGGATTCCATCTATGGAGCCTAATCCTAATGTTTTGGGTTCAAGTTCAGTGGAAAGTTCAAGGATTGAAGTTTTGGAAAATAGTGGGGACACCAGTGGTAGAAGGGAAGATAGTGCTAATGGAGAAGAAGAAGAAGAACAAGAAGTTGAAGATGGGAGAAGGGTATGTGAAGGTGAGAATTCAGCTTCAGAGGTGGTAAATATGCAGCCAAGAAGATCAGTTTCTTTGGATTCTTCTGCTGCTGCTAAGATCAATCTTGCTCTTGCAACTGTTGGAATAGGATCTCTTGGGAATTCAAATAGACAGCAGGTGGAGGAAGTCAATGTACAAATTGTTTCAAAGAGGGTTTCTGGAAATGGGAATTTGGTAGTGAAAGCCGCAGCCAGAAGAAGCCCAATGCTCCTCTCAGAAGCTTTTGATTGTCCTCTTGGCTCCTTAGAAGAAGCTCTACAAGCTGAGAGTTTGAGGGATTTCTGTGTGAATCAAATAAGTCATGTGATGATAAAGTGTATAATAGCAAAGCAGAAGGTTACACACAATTTGAGGATTATCCTTGCTCAGAAGGTGCCAAGGCCACATAACCATCAAAATGTTAAAGTTACTGCCTAA 1188 0.4066 MGLHYRKLLSDSDYCDIFCHVDKSCSSDCDDCIKSCNYPSSHHSKIKTSTYLIISFSLAATAFFVVCCYAIYVKFFSGRNRSRRRVLSQQQTEDDDFVDEEHGPMVDHPIWYIRTTGLQQSIITAITVCKYKKGEGLIEGTECSVCLSEFQEDENLRLLPKCNHAFHLPCIDTWLRSHTNCPMCRAPIVTNPARIPSMEPNPNVLGSSSVESSRIEVLENSGDTSGRREDSANGEEEEEQEVEDGRRVCEGENSASEVVNMQPRRSVSLDSSAAAKINLALATVGIGSLGNSNRQQVEEVNVQIVSKRVSGNGNLVVKAAARRSPMLLSEAFDCPLGSLEEALQAESLRDFCVNQISHVMIKCIIAKQKVTHNLRIILAQKVPRPHNHQNVKVTA. 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g05344 395 CDD RING-H2_EL5-like 142 185 - -
Seca11g05344 395 MobiDBLite consensus disorder prediction 216 247 - -
Seca11g05344 395 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 42 193 IPR044675 -
Seca11g05344 395 MobiDBLite consensus disorder prediction 192 211 - -
Seca11g05344 395 FunFam RING-H2 finger protein ATL54 118 191 - -
Seca11g05344 395 SUPERFAMILY RING/U-box 137 192 - -
Seca11g05344 395 Pfam Ring finger domain 142 185 IPR001841 -
Seca11g05344 395 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 192 IPR013083 -
Seca11g05344 395 SMART ring_2 143 184 IPR001841 -
Seca11g05344 395 ProSiteProfiles Zinc finger RING-type profile. 143 185 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g05344 Seca-Chr11 150524840 150526649 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g05344 56 258 C3H Transcription Factor Family AT1G72220 45.714 2.54e-49 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g05344 - - mtr:11411830 384.415