Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g05330 ATGGCATTTTACGCAGGTAACCACGACATTCGTGTGACTAAAATTGAGTCAACAGACCAACAACAAAGTCAATCCTTGCAAAACGCCAAACCCACAGCCATAGATTTCTTCAAAATCGAACTCACTGCCATCATTGACTCAATTTACTTAGACTCCCCACCAAAAGTGATTGAAGTTGGGTGCAAAGACTTCTTCGAAGATAATGATGATTTACTACGATTCTTAGTATCTGACGACTCACCATTAATACCATATGTCACCTATGAAGAGCTTGATGAGTTAACACAGAGGATCATATCTCAGGTTCAACAACTCTTTGACATCAACGGTGAGGATCTTTCTGAATCTGCAAAACCAACCGATGTGGAACCCCGAATTTTTTCTTTGGCTGTGGAAATTATCATTGACGTGGGATCGGATGAAGAGAACAATCTAGAGAACGATCTTGCAGTGATAGAAGAGTCCATACAAAGTGTCCAGATGATTCCAGCTTCCATGAACGCCGTTCAGTCTTTGAAAATATATACGCTTCCTTATAGGTGTAATATATGTATGGAGAAATTTTATGATCACGATACTGATGAAGATGAAGTGGTGATATCGCCAATGCCTTGTGATCATGTTTTTCATCATAGTTGTATTGTGCACTGGTTACAAACGAATCATGTGTGTCCCTTGTGTCGTTATCCTATGCCTATCACAGATAACTAA 711 0.3952 MAFYAGNHDIRVTKIESTDQQQSQSLQNAKPTAIDFFKIELTAIIDSIYLDSPPKVIEVGCKDFFEDNDDLLRFLVSDDSPLIPYVTYEELDELTQRIISQVQQLFDINGEDLSESAKPTDVEPRIFSLAVEIIIDVGSDEENNLENDLAVIEESIQSVQMIPASMNAVQSLKIYTLPYRCNICMEKFYDHDTDEDEVVISPMPCDHVFHHSCIVHWLQTNHVCPLCRYPMPITDN. 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g05330 236 ProSiteProfiles Zinc finger RING-type profile. 181 228 IPR001841 -
Seca11g05330 236 SUPERFAMILY RING/U-box 180 233 - -
Seca11g05330 236 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 140 234 IPR013083 -
Seca11g05330 236 SMART ring_2 181 227 IPR001841 -
Seca11g05330 236 Pfam Ring finger domain 181 228 IPR001841 -
Seca11g05330 236 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 112 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g05330 Seca-Chr11 150386512 150387222 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g05330 150 235 C3H Transcription Factor Family AT1G18760 36.957 6.39e-13 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g05330 - - aprc:113859940 168.318