Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g05321 ATGACTAGGAAAAGGATACAGATCAAGAAAATTGATAACATAAGTTCAAGGCAGGTGACTTTTTCTAAGAGGAGGAAAGGGCTTTTCAAGAAAGCTCAGGAGCTGTCAACTCTTTGTGATGCAGATATTGCTCTCATGGTCTTTTCTGCAACTAGCAAACTCTTTGAGTATGCTAGTTCAAGGTATTTCAGTATCACCAGTTTTATCTTCATCCTCTTAATTTGTGGAAGGATCCAAACTTATATATATACTCTGAAACTAGTGCAACTGTGA 273 0.37 MTRKRIQIKKIDNISSRQVTFSKRRKGLFKKAQELSTLCDADIALMVFSATSKLFEYASSRYFSITSFIFILLICGRIQTYIYTLKLVQL. 91
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g05321 90 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Seca11g05321 90 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Seca11g05321 90 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Seca11g05321 90 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Seca11g05321 90 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Seca11g05321 90 SUPERFAMILY SRF-like 1 67 IPR036879 GO:0003677|GO:0046983
Seca11g05321 90 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Seca11g05321 90 Gene3D - 13 69 IPR036879 GO:0003677|GO:0046983
Seca11g05321 90 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Seca11g05321 90 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g05321 Seca-Chr11 150211381 150211653 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g05321 1 65 MADS-box Gene Family AT4G24540 70.769 7.35e-29 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Seca11g05321 SRF-TF 1.4e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g05321 - - aprc:113860188 114.775