Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g05302 ATGATTGGACATTTTTGGGGTTTGCCAACCCTTTTCTTGGTGAAGCACAGGTGCAGGCTGTATTATTACTCTTGGGAGGGCAGGAGATGCCCAATAGCATCCCCACCTCTGACTTTTTGCTGCAGCAAAACTGTCAGGACATTGGGTTCAAAGCTTTCACGGAGAATTGCATCACTTGTTAGGTTTCGTGAAAAAAGAAAAGAGAGATGTTTTGAGAAGAAAATTCGGTATACTTGCCGTAAAGAGCATTCAAATATCCTGGCTTTCAAAATAAGAATTGGGGTTTTACTTTTGAAACTACCATGTTCTGCTTGTCCTCTGGACATAAAGGCTGGTGCTCTTAAGATTGATAATTTTTGGTTATCTAATAGGATGCATCGTAAGAATGGACAGTTTGCATCATTGAAGGAAGATTACAAATCTCCTGCTGAAAACTTGGATTCTAGCAATGGTACTCCTTGCCCAGAATCTATTGAACGTAGATGCCAACATTGTGGAATTAGTGAGAAGTCTACTCCAGCTATGCGTCGAGGACCGGCTGGTCCAAGATCACTGTGCAATGCTTGTGGGCTTATGTGGGCAAATAAGGGAACTCTGAGAGATCTCAGCAAAGCAGGAAGGATTGCTTTAGAACAAAATGAACCGGATACTTCAGCTGATATAAAGCCTTCAACAACAGAACCAGAAAATTCTTGTGCTGACCGGGATGAGGGAAGCCCTGAGGAAACTAAGCCTGTGCCAGTGGATTCCAGACAGCCACCTGAAAAGAAAAATGAGCAGTATATACTTGAAACTGCTGAAGCAGTTACTGACAACTTGCCTATACAAATGGAGAATCATGCTCTTAGTCTGCACGAGCAGGATGCTATTGAAGATCTTGCTGATGCTTCAGGGACCGAATTCGAGATTCCAGCAGGTTTTGATGATCAGGTTGATATTGATGATTCCAACATGAGGACCTACTGGCTGTGA 972 0.429 MIGHFWGLPTLFLVKHRCRLYYYSWEGRRCPIASPPLTFCCSKTVRTLGSKLSRRIASLVRFREKRKERCFEKKIRYTCRKEHSNILAFKIRIGVLLLKLPCSACPLDIKAGALKIDNFWLSNRMHRKNGQFASLKEDYKSPAENLDSSNGTPCPESIERRCQHCGISEKSTPAMRRGPAGPRSLCNACGLMWANKGTLRDLSKAGRIALEQNEPDTSADIKPSTTEPENSCADRDEGSPEETKPVPVDSRQPPEKKNEQYILETAEAVTDNLPIQMENHALSLHEQDAIEDLADASGTEFEIPAGFDDQVDIDDSNMRTYWL. 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g05302 323 ProSitePatterns GATA-type zinc finger domain. 162 189 IPR000679 GO:0006355|GO:0043565
Seca11g05302 323 PANTHER GATA TRANSCRIPTION FACTOR 28 49 302 IPR045280 GO:0006355
Seca11g05302 323 MobiDBLite consensus disorder prediction 229 256 - -
Seca11g05302 323 Gene3D - 156 214 IPR013088 GO:0006355|GO:0008270
Seca11g05302 323 ProSiteProfiles GATA-type zinc finger domain profile. 156 213 IPR000679 GO:0006355|GO:0043565
Seca11g05302 323 SMART GATA_3 156 209 IPR000679 GO:0006355|GO:0043565
Seca11g05302 323 Pfam CCT motif 55 82 IPR010402 GO:0005515
Seca11g05302 323 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 158 209 - -
Seca11g05302 323 CDD ZnF_GATA 161 204 IPR000679 GO:0006355|GO:0043565
Seca11g05302 323 Pfam GATA zinc finger 162 198 IPR000679 GO:0006355|GO:0043565
Seca11g05302 323 MobiDBLite consensus disorder prediction 212 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g05302 Seca-Chr11 150011522 150018273 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g05302 27 205 Tify Gene Family AT1G51600 43.523 4.62e-36 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Seca11g05302 GATA 3.2e-13 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g05302 - - gmx:102669848 393.66