Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g05298 ATGTCATCTTTAGATGTTGATTGCAAGCCAAGAGTTGGTATGGAATTTGATAGTGTAGAGACAGCTTGGCAATTTTGGCTTAGATATGGGGCACAGACTGGCTTTGGAGTTCGATTACGATACACAAATAAAAGAAAACAAGATGGCGCTATTACTTCATGTAGGTTTGTTTGTTGTAAGGAGGGGGTACGAACAACAAACAGTGCTTTGGTTAGCAACCATAGAGCTGCGACCAGAACTGATTGCAAAGCAAGGATTTCACTTATATTAAAGAACGAAAAGCTTGTCCTACATGAGTTTGTAGATGACCATAACCACCCTCTACAACTTCCAGAGACAACACACATGCTTGCGTCACACAGAAAAATAAGTGAAGTCCAAGCATATGAGATTGATCTAGCGGATGACTCTGGATTAAAGCAAAAGTCAGCATTTCAGCTTATGAGCACACATGCAGGGCATAGATCTAATCTTGGATATACACGGTTGGATGTAAAAAATTACCTCAATGCAAGAAGACAAAGAAGCATGGTGTATGGTGAAGTTGGATGTCTTTTACAATATTTTCAAGGACAATTAAAGGAAAACCCATCTTTCTTCCATGCATTTCAAATGGATATGGATGAACAAATCACAAATATATTCTGGGCTGATGCAAATATGGTGTTGGATTATGGGTATTTTGGTGATGTTATGTCATTGGATACTACATATTGTACCAATCGTGCAAATAGACCACTTGCTCTGTTTTCTGGTTTCAACCATTATAGGGATACGGTCATTTTTGGGGCAGCATTATTGTATGACGAAACCATTGAATCATTTAAATGGTTGTTTGAGACATTCTTACAGGCACACAACCAGAAAAAACCTCAAACTATCTTTACTGACCAAGACCAGGCAATGGCTAGGGCGCTTATTGAGGTGATGCCTGAGGTTCGGCATGGTTTATGTACTTGGCACTTGTTGCAGAATGGTATTAAACATCTTGGCAACTTGATGAAAGGAGGAAGTTATTTTTTAAGAGATTTCAAAAAATGCATGTATGCCTTTGACACTGAAGCAGAGTTTGAGACAGCTTGGACCCAGTTGATCTTAGATTATAATGTTCATGAAAATAACTGGATCAAATCGATTTATGCCATAAAAGAAAAATGGGCACCATGTTACATGAAGGAGACATTCACACTTGGGATGAGGAGTACCCAACTAAGTGAAAGCTTGAATTCTCATTTCAAATCTTGTATGAAACCGAATGTGGACATCATGCAATTCTTCAAACACTTTGAACGAGTTATTGAAGAGAAGAGAAGCAATGAATTGACTTGTGAGTATGAGTCCCGTCATAAGCTTGCAATGTTAAGATATGAGCTTTGTAGAAAGTTTGAGACATTTGGCATACTTTGTTCACATGCATTGAAAGTATTTGAAGCAAATGATGTTAAGGTTGTTCCTGAGAAGTATATTTTAAAAAGGTGGACAAGAGAAGCTCGCAGAGGCATTGTGCATGATGTAAGGGGAAATGAGTTTGAAGGTGATCCAAAGATATCAAGCACAAGGAGATTTAGGCAAGTTGTCTCTAAATTTGTTAAATTGGCAGCCGAGGTGTCCACTCCTGAAGAATACCACAATATTCTTGACAATGGGGTCGATGCATTATCGAAGCAAATAATGGAACTTCGCTTACAAGTAGGAAACATTAATAGTCATAACAATGATGATTTACCATTTGTCAGTGGATGTGCATCTCAACCAAAGGGATTCAAGCAACGACCTGGTTCAAAGAGACATAAGCGATTAAAAAGTTGGGTTGAGCTTCAATCCAATAGAAAAAGAAGAGCTCCAACTAGAGGACAGCCAAACAACCAAGCATCTCAGTTAAGAAGTAATAAGCCTGGGGAAGTAGCTTGTTCAGCACCTGCAGCTTGTCAGCCCCCTCAATTTAGTTTCACAGAACTTTTGATGGCACCACTTGATGACATGTGTTCAATCCCCAATCTACATTTAAGCTAA 2013 0.3875 MSSLDVDCKPRVGMEFDSVETAWQFWLRYGAQTGFGVRLRYTNKRKQDGAITSCRFVCCKEGVRTTNSALVSNHRAATRTDCKARISLILKNEKLVLHEFVDDHNHPLQLPETTHMLASHRKISEVQAYEIDLADDSGLKQKSAFQLMSTHAGHRSNLGYTRLDVKNYLNARRQRSMVYGEVGCLLQYFQGQLKENPSFFHAFQMDMDEQITNIFWADANMVLDYGYFGDVMSLDTTYCTNRANRPLALFSGFNHYRDTVIFGAALLYDETIESFKWLFETFLQAHNQKKPQTIFTDQDQAMARALIEVMPEVRHGLCTWHLLQNGIKHLGNLMKGGSYFLRDFKKCMYAFDTEAEFETAWTQLILDYNVHENNWIKSIYAIKEKWAPCYMKETFTLGMRSTQLSESLNSHFKSCMKPNVDIMQFFKHFERVIEEKRSNELTCEYESRHKLAMLRYELCRKFETFGILCSHALKVFEANDVKVVPEKYILKRWTREARRGIVHDVRGNEFEGDPKISSTRRFRQVVSKFVKLAAEVSTPEEYHNILDNGVDALSKQIMELRLQVGNINSHNNDDLPFVSGCASQPKGFKQRPGSKRHKRLKSWVELQSNRKRRAPTRGQPNNQASQLRSNKPGEVACSAPAACQPPQFSFTELLMAPLDDMCSIPNLHLS. 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g05298 670 SMART 26again6 455 482 IPR006564 GO:0008270
Seca11g05298 670 Pfam MULE transposase domain 231 325 IPR018289 -
Seca11g05298 670 MobiDBLite consensus disorder prediction 606 635 - -
Seca11g05298 670 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 5 555 IPR031052 GO:0006355
Seca11g05298 670 MobiDBLite consensus disorder prediction 581 600 - -
Seca11g05298 670 MobiDBLite consensus disorder prediction 613 632 - -
Seca11g05298 670 Pfam FAR1 DNA-binding domain 24 109 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g05298 Seca-Chr11 149962925 149965334 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca11g05298 MULE 6.8e-26 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g05298 - - aprc:113855580 756.903