Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g05291 ATGTTGCAGCTTTCTATTCAACGAGTAAAGAAGTTGAACTTTCTGAGGCCTCAGATCTCTGCTTTGGGAAGTTACCATTTTTCAACCGCCGCCGAGCCATCTTCCAGTAAGCGTAATCCCCCGAGGGTTCCAAATCTTATTGGGGGCAAGTTTCTTGACTCAAAATCATCTACCTTTATCGATGTTATAAACCCAGCAACCCAAGAAGTTGTTTCACAAGTTCCTTTGACTACAGATGAAGAGTTTAAGGTCGCTGTGTCTGCAGCAAAGAAGGCCTTTCCATCATGGCGTAACACTCCAATTACGACACGCCAACGTGTTATGTTGAAGCTCCAAGAGCTTATTCGCAGAGATATGGATAAACTTGCTCTCAATGTGACTACTGAACAAGGAAAGACATTAAAGGATGCACAAGGAGATGTATTTCGTGGATTAGAGGTGGTGGAACATGCTTGTGGGATGGCAACTCTACAAATGGGAGAGTATGTTTCCAATGTCTCACATGGAATTGATACTTACAGCATTAGAGAACCACTTGGTGTCTGTGCTGGTATTTGTCCTTTCAACTTTCCTGCAATGATTCCCTTGTGGATGTTCCCTATGGCTGTTACCTGTGGTAATACCTTTGTTCTAAAACCATCAGAGAAAGACCCAGGTGCTTCTGTAATGCTTGCAGAATTGGCATTGGAGGCTGGTTTGCCTGAGGGTGTCTTAAATATAGTTCATGGAACCCATGATGTTGTGAATGCTATTTGCGATGATGACGATATCAAAGCCATATCTTTTGTTGGTTCAAATGTTGCTGGAATGCACATATATTCAAGAGCAGCAGCTAAAGGGAAACGTGTTCAGTCTAATATGGGGGCAAAAAATCATGCAATTGTCATGCCAGATGCAAATGTTGATGCTACTCTAAATGCTTTAGTTGCTGCTGGTTTTGGTGCTGCTGGACAAAGGTGTATGGCTCTCAGCACAGTTGTTTTTGTTGGAGGCTCACAATCATGGGAAGCTAAACTTACAGAGCGTGCTAAGGCTCTTAAAGTAAATGCTGGAACTGAACCTGATACAGACCTTGGTCCTGTCATCAGCAAACAGGCAAAGGAGCGAATACACAAATTAGTTCAATCTGGGGTTGAAAGTGGTGCCAAACTACTGCTTGACGGAAGAAATATAGTGGTCCCGGGATATGAATCTGGCAATTTTATTGGCCCAACCATCTTATCAGATGTGACTCCTAACATGGAGTGCTACAAGGAGGAAATTTTTGGCCCAGTTCTTCTCACAATGGAGGCTGATAGCTTGGAAGAGGCCATAAACATTATCAACAAAAACAAGTATTTTTCAACAACTCACTGTTGTTATTGCCTTTTGTTAAACTGCTATTTGTTTCTTACTCTGACTTTCTCCAACAGGTATGGAAATGGTGCATCTATTTTTACTACATCTGGTGTCGCTGCAAGGAAATTTCAGACAGAAATTGAGGCTGGACAGGTTGGTATCAACGTTCCCATTCCAGTTCCTTTGCCCTTTTTCTCATTTACTGGCAACAAGGCATCATTTGCTGGGGATCTCAATTTCTATGGCAAGGCTGGGGTTAACTTTTATACACAGATCAAAACAATAACCCAGCAATGGAAAGATTCAGCTGGTGGTAGCAAGATTAACATGGCAATGCCAACCTCTCAAAAATCTTGA 1695 0.4224 MLQLSIQRVKKLNFLRPQISALGSYHFSTAAEPSSSKRNPPRVPNLIGGKFLDSKSSTFIDVINPATQEVVSQVPLTTDEEFKVAVSAAKKAFPSWRNTPITTRQRVMLKLQELIRRDMDKLALNVTTEQGKTLKDAQGDVFRGLEVVEHACGMATLQMGEYVSNVSHGIDTYSIREPLGVCAGICPFNFPAMIPLWMFPMAVTCGNTFVLKPSEKDPGASVMLAELALEAGLPEGVLNIVHGTHDVVNAICDDDDIKAISFVGSNVAGMHIYSRAAAKGKRVQSNMGAKNHAIVMPDANVDATLNALVAAGFGAAGQRCMALSTVVFVGGSQSWEAKLTERAKALKVNAGTEPDTDLGPVISKQAKERIHKLVQSGVESGAKLLLDGRNIVVPGYESGNFIGPTILSDVTPNMECYKEEIFGPVLLTMEADSLEEAINIINKNKYFSTTHCCYCLLLNCYLFLTLTFSNRYGNGASIFTTSGVAARKFQTEIEAGQVGINVPIPVPLPFFSFTGNKASFAGDLNFYGKAGVNFYTQIKTITQQWKDSAGGSKINMAMPTSQKS. 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g05291 564 CDD ALDH_F6_MMSDH 43 545 IPR010061 GO:0004491
Seca11g05291 564 PANTHER MALONATE-SEMIALDEHYDE DEHYDROGENASE 9 449 IPR010061 GO:0004491
Seca11g05291 564 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 469 507 IPR016163 GO:0016620
Seca11g05291 564 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 313 324 IPR016160 GO:0016491
Seca11g05291 564 FunFam Methylmalonate-semialdehyde dehydrogenase [acylating] 47 294 - -
Seca11g05291 564 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 508 540 IPR016162 GO:0016491
Seca11g05291 564 Pfam Aldehyde dehydrogenase family 52 446 IPR015590 GO:0016491
Seca11g05291 564 Pfam Aldehyde dehydrogenase family 470 541 IPR015590 GO:0016491
Seca11g05291 564 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 62 287 IPR016162 GO:0016491
Seca11g05291 564 SUPERFAMILY ALDH-like 40 546 IPR016161 GO:0016491
Seca11g05291 564 NCBIfam CoA-acylating methylmalonate-semialdehyde dehydrogenase 45 450 IPR010061 GO:0004491
Seca11g05291 564 FunFam Methylmalonate-semialdehyde dehydrogenase (Acylating) 288 455 - -
Seca11g05291 564 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 288 446 IPR016163 GO:0016620
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g05291 Seca-Chr11 149808806 149819859 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g05291 12 529 Aldehyde Dehydrogenase Gene Family AT2G14170 78.185 0.0 827
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g05291 K00140 - gmx:100791508 978.393