LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca11g05291	ATGTTGCAGCTTTCTATTCAACGAGTAAAGAAGTTGAACTTTCTGAGGCCTCAGATCTCTGCTTTGGGAAGTTACCATTTTTCAACCGCCGCCGAGCCATCTTCCAGTAAGCGTAATCCCCCGAGGGTTCCAAATCTTATTGGGGGCAAGTTTCTTGACTCAAAATCATCTACCTTTATCGATGTTATAAACCCAGCAACCCAAGAAGTTGTTTCACAAGTTCCTTTGACTACAGATGAAGAGTTTAAGGTCGCTGTGTCTGCAGCAAAGAAGGCCTTTCCATCATGGCGTAACACTCCAATTACGACACGCCAACGTGTTATGTTGAAGCTCCAAGAGCTTATTCGCAGAGATATGGATAAACTTGCTCTCAATGTGACTACTGAACAAGGAAAGACATTAAAGGATGCACAAGGAGATGTATTTCGTGGATTAGAGGTGGTGGAACATGCTTGTGGGATGGCAACTCTACAAATGGGAGAGTATGTTTCCAATGTCTCACATGGAATTGATACTTACAGCATTAGAGAACCACTTGGTGTCTGTGCTGGTATTTGTCCTTTCAACTTTCCTGCAATGATTCCCTTGTGGATGTTCCCTATGGCTGTTACCTGTGGTAATACCTTTGTTCTAAAACCATCAGAGAAAGACCCAGGTGCTTCTGTAATGCTTGCAGAATTGGCATTGGAGGCTGGTTTGCCTGAGGGTGTCTTAAATATAGTTCATGGAACCCATGATGTTGTGAATGCTATTTGCGATGATGACGATATCAAAGCCATATCTTTTGTTGGTTCAAATGTTGCTGGAATGCACATATATTCAAGAGCAGCAGCTAAAGGGAAACGTGTTCAGTCTAATATGGGGGCAAAAAATCATGCAATTGTCATGCCAGATGCAAATGTTGATGCTACTCTAAATGCTTTAGTTGCTGCTGGTTTTGGTGCTGCTGGACAAAGGTGTATGGCTCTCAGCACAGTTGTTTTTGTTGGAGGCTCACAATCATGGGAAGCTAAACTTACAGAGCGTGCTAAGGCTCTTAAAGTAAATGCTGGAACTGAACCTGATACAGACCTTGGTCCTGTCATCAGCAAACAGGCAAAGGAGCGAATACACAAATTAGTTCAATCTGGGGTTGAAAGTGGTGCCAAACTACTGCTTGACGGAAGAAATATAGTGGTCCCGGGATATGAATCTGGCAATTTTATTGGCCCAACCATCTTATCAGATGTGACTCCTAACATGGAGTGCTACAAGGAGGAAATTTTTGGCCCAGTTCTTCTCACAATGGAGGCTGATAGCTTGGAAGAGGCCATAAACATTATCAACAAAAACAAGTATTTTTCAACAACTCACTGTTGTTATTGCCTTTTGTTAAACTGCTATTTGTTTCTTACTCTGACTTTCTCCAACAGGTATGGAAATGGTGCATCTATTTTTACTACATCTGGTGTCGCTGCAAGGAAATTTCAGACAGAAATTGAGGCTGGACAGGTTGGTATCAACGTTCCCATTCCAGTTCCTTTGCCCTTTTTCTCATTTACTGGCAACAAGGCATCATTTGCTGGGGATCTCAATTTCTATGGCAAGGCTGGGGTTAACTTTTATACACAGATCAAAACAATAACCCAGCAATGGAAAGATTCAGCTGGTGGTAGCAAGATTAACATGGCAATGCCAACCTCTCAAAAATCTTGA	1695	0.4224	MLQLSIQRVKKLNFLRPQISALGSYHFSTAAEPSSSKRNPPRVPNLIGGKFLDSKSSTFIDVINPATQEVVSQVPLTTDEEFKVAVSAAKKAFPSWRNTPITTRQRVMLKLQELIRRDMDKLALNVTTEQGKTLKDAQGDVFRGLEVVEHACGMATLQMGEYVSNVSHGIDTYSIREPLGVCAGICPFNFPAMIPLWMFPMAVTCGNTFVLKPSEKDPGASVMLAELALEAGLPEGVLNIVHGTHDVVNAICDDDDIKAISFVGSNVAGMHIYSRAAAKGKRVQSNMGAKNHAIVMPDANVDATLNALVAAGFGAAGQRCMALSTVVFVGGSQSWEAKLTERAKALKVNAGTEPDTDLGPVISKQAKERIHKLVQSGVESGAKLLLDGRNIVVPGYESGNFIGPTILSDVTPNMECYKEEIFGPVLLTMEADSLEEAINIINKNKYFSTTHCCYCLLLNCYLFLTLTFSNRYGNGASIFTTSGVAARKFQTEIEAGQVGINVPIPVPLPFFSFTGNKASFAGDLNFYGKAGVNFYTQIKTITQQWKDSAGGSKINMAMPTSQKS.	565

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca11g05291	564	CDD	ALDH_F6_MMSDH	43	545	IPR010061	GO:0004491
	Seca11g05291	564	PANTHER	MALONATE-SEMIALDEHYDE DEHYDROGENASE	9	449	IPR010061	GO:0004491
	Seca11g05291	564	Gene3D	Aldehyde Dehydrogenase; Chain A, domain 2	469	507	IPR016163	GO:0016620
	Seca11g05291	564	ProSitePatterns	Aldehyde dehydrogenases cysteine active site.	313	324	IPR016160	GO:0016491
	Seca11g05291	564	FunFam	Methylmalonate-semialdehyde dehydrogenase [acylating]	47	294	-	-
	Seca11g05291	564	Gene3D	Aldehyde Dehydrogenase; Chain A, domain 1	508	540	IPR016162	GO:0016491
	Seca11g05291	564	Pfam	Aldehyde dehydrogenase family	52	446	IPR015590	GO:0016491
	Seca11g05291	564	Pfam	Aldehyde dehydrogenase family	470	541	IPR015590	GO:0016491
	Seca11g05291	564	Gene3D	Aldehyde Dehydrogenase; Chain A, domain 1	62	287	IPR016162	GO:0016491
	Seca11g05291	564	SUPERFAMILY	ALDH-like	40	546	IPR016161	GO:0016491

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca11g05291	Seca-Chr11	149808806	149819859	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca11g05291	12	529	Aldehyde Dehydrogenase Gene Family	AT2G14170	78.185	0.0	827

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca11g05291	K00140		-	gmx:100791508	978.393

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