Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g05286 ATGCCAAATGGAAGCTTAGATGTTCATCTTTTCAACTTGGCTTCTGCATTGCTATACTTGCATGAAGAATGGGAACAGTGTGTTGTACATAGAGACATAAAATCAAGCAACATAATGCTAGATGCAGAGTTTAATGCAAAACTGGGAGATTTTGGTTTAGCAAGGTTTGTGGACCATGCAAAAGGTGCACAAACTACAGCTTTAGCAGGGACTATGGGCTACATGGCACCTGAATGTGTTATTACGGGCAGAGCTAGTAAGGAATCAGATGTCTACAGTTTTGGAGTTGTTGCTTTAGAGATAGCTTGTGGGAGGAAACCCATAAGCCTTAAGGCCCAAGAAAATGAAATAAATATTGTGGAGTGGGTCTGGGGGCTCTATGGAAAGGGGAGAATTCTTGAAGCAGCAGATCCAAGACTAGGTGGAGATTTTGAAGAGGACCAAATCAAATGCTTGATGATTGTTGGTCTTTGGTGTGCTCACCCTGATCATAAAAATAGGCCTTCAATAAGGCAAGCAATTCAAGTGCTTAACTTCGAAGCTCCCCTGCCCCATCTTCCATCAAGTGTACCTGTACCAACTTATGTTGACAGCCCACTGAACAAATCCGTAGCTTCATTCAGCATAAATTCTTCAAAGGCAGGCCAGAATCAGAACATAAACTTTAGTTCAAACACAAACTCCTCTGGGTTCACCACAACCTCTGATGATGTTTCTCCTTCTATATAG 729 0.4198 MPNGSLDVHLFNLASALLYLHEEWEQCVVHRDIKSSNIMLDAEFNAKLGDFGLARFVDHAKGAQTTALAGTMGYMAPECVITGRASKESDVYSFGVVALEIACGRKPISLKAQENEINIVEWVWGLYGKGRILEAADPRLGGDFEEDQIKCLMIVGLWCAHPDHKNRPSIRQAIQVLNFEAPLPHLPSSVPVPTYVDSPLNKSVASFSINSSKAGQNQNINFSSNTNSSGFTTTSDDVSPSI. 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g05286 242 SMART serkin_6 1 177 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g05286 242 Pfam Protein kinase domain 12 175 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g05286 242 Gene3D Transferase(Phosphotransferase) domain 1 1 198 - -
Seca11g05286 242 ProSiteProfiles Protein kinase domain profile. 1 186 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g05286 242 PANTHER - 1 187 - -
Seca11g05286 242 SUPERFAMILY Protein kinase-like (PK-like) 1 201 IPR011009 -
Seca11g05286 242 MobiDBLite consensus disorder prediction 218 242 - -
Seca11g05286 242 ProSitePatterns Serine/Threonine protein kinases active-site signature. 28 40 IPR008271 GO:0004672|GO:0006468
Seca11g05286 242 FunFam Lectin-domain containing receptor kinase A4.3 9 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g05286 Seca-Chr11 149586562 149587338 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g05286 1 195 Receptor kinase-like Gene Family AT5G10530 64.953 1.98e-92 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Seca11g05286 Pkinase 1.2e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g05286 - - gmx:100817743 396.741