Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g05279 ATGGGGAGAGGAAAGATTGTGATTGAAAGGATTGACAATTCGACTAGCCGGCAAGTGACTTTTTCAAAGAGAAGAAAAGGTTTACTGAAGAAAGCAAGAGAACTATCCATTCTCTGTGATGCTCAAGTTGGATTGATTGTCTTCTCTTGCACCGGCAAGCTTTATGACTATGCAAGCACAAGCATGAAATCTGTCATTGAGCGTTATAACAAGCTAAAAGAGAACCATGATCAGCTAATGAGTCCTGCTTCAGAAGTCAAGGTAACACGGTCCACTTATACCACTCCTCCATTTATGTTGTATTTTAATTTCCCTGTATAA 321 0.3956 MGRGKIVIERIDNSTSRQVTFSKRRKGLLKKARELSILCDAQVGLIVFSCTGKLYDYASTSMKSVIERYNKLKENHDQLMSPASEVKVTRSTYTTPPFMLYFNFPV. 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g05279 106 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Seca11g05279 106 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Seca11g05279 106 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Seca11g05279 106 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Seca11g05279 106 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Seca11g05279 106 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Seca11g05279 106 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Seca11g05279 106 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Seca11g05279 106 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Seca11g05279 106 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Seca11g05279 106 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Seca11g05279 106 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g05279 Seca-Chr11 149438782 149443105 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g05279 1 87 MADS-box Gene Family AT4G37940 79.310 1.13e-46 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Seca11g05279 SRF-TF 1.6e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g05279 K09264 - gmx:100779647 154.066