Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g05277 ATGAGTGATTCGGCAGATTTGGACTCCTATATATCCACTCATGCGATATCATCATCTACATCCAGAAAGCCGTATGCTTTGGAAGAAGCTTGTACAGTTTGGGAAGGGGTTTTGATTGATCAAAAAGAAGAATCTACTTCAACCGATATGCCCTTAGGCACGGCCATACATAACATAGAAATCACACTCGGAAAGGGTGGACAATTAGCTAGAGCAGCAGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGTAAATCGGCAACATTAAAATTACCTTCTGGGGAGGTCCGTTTGATATCCAAAAACTGCTCAGCAACAGTCGGACAAGTGGGGAATGTTGGGGTAAACCAGAAAAGTTTGGGTAAAGCCGGATCTAAATGTTGGCTAGGTAAACGTCCTGTAGTAAGAGGAGTAGTCAGAAACTGGCTGCGCAGACATAGGGTAACGTGCAAAGTGGATTTAAACCGACCCTTTATTGCCACATCATTTGTTCATTTCAGACAAGTGCAAGATTTCAGACATCCAGTTAATTTCAGACGACCAAAACTTCAGACAGGTCACATGTTTCAGATAGACTGA 579 0.4301 MSDSADLDSYISTHAISSSTSRKPYALEEACTVWEGVLIDQKEESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGKAGSKCWLGKRPVVRGVVRNWLRRHRVTCKVDLNRPFIATSFVHFRQVQDFRHPVNFRRPKLQTGHMFQID. 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g05277 192 Gene3D Ribosomal protein L2, domain 3 112 144 IPR014726 -
Seca11g05277 192 PANTHER RIBOSOMAL PROTEIN L2 47 142 IPR002171 GO:0003735|GO:0005840|GO:0006412
Seca11g05277 192 FunFam 50S ribosomal protein L2, chloroplastic 36 111 - -
Seca11g05277 192 Gene3D - 26 111 IPR014722 -
Seca11g05277 192 SMART Ribosomal_L2_C_2 49 154 IPR022669 GO:0003735|GO:0005840|GO:0006412
Seca11g05277 192 SUPERFAMILY Translation proteins SH3-like domain 49 142 IPR008991 -
Seca11g05277 192 Pfam Ribosomal Proteins L2, C-terminal domain 49 142 IPR022669 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g05277 Seca-Chr11 149362099 149362719 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g05277 50 141 Cytoplasmic Ribosomal Protein Gene Family AT3G51190 40.777 7.41e-13 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g05277 K02886 - ghi:121227132 231.876