Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g05276 ATGGGAAGAGGAAAGATTGTGATCAAAAGGATTGACAACACCACAAACAGGCAAGTGACTTTTTCAAAAAGAAGAAGTGGGCTGCTCAAAAAGGCTAGGGAGTTGTCTATCCTTTGTGATGCTGAAATTGGAGTGATTATCTTCTCCAGTACTGGCAGGCTCTATGATTTTGCAAGCTCAAGCAGCATGAAATCCATCATTGAACGCTATAATAGACAAAAGGAAGAACGGAATCGGCTGATGGATCCTGCATCTGAAGTCAAGTTTTGGCAGAATGAGGCAGCAAGGTTAAGGCAACAGTTGCAGCATGTGCAAAACTATAATAGGCAATTGATGGGCCATGAATTATCTAGTTTGAGCATAAAAGATCTGCGGAACATGGAAAACCAGTTGGAAATGAGTTTAAGGAGTATCCGTGTGAAAAAGGACCAACTTCTCATCGGTGAAATAGAAAAATTAACCCAGAAGGTTAGAGCAAGTGATGCACATAAAGCAAATAGTGGCTCTCCTTTCCCAAGCGCGGCGGCGGACAATGAACATGGCCGAAACGTACCTCTCCATCTCCATACAATTGAGCCTCAGCTTCAAAACAATGTAATACCAGCAAAACCAGTGAAACTGGGGTATTTTCTATAA 636 0.4214 MGRGKIVIKRIDNTTNRQVTFSKRRSGLLKKARELSILCDAEIGVIIFSSTGRLYDFASSSSMKSIIERYNRQKEERNRLMDPASEVKFWQNEAARLRQQLQHVQNYNRQLMGHELSSLSIKDLRNMENQLEMSLRSIRVKKDQLLIGEIEKLTQKVRASDAHKANSGSPFPSAAADNEHGRNVPLHLHTIEPQLQNNVIPAKPVKLGYFL. 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g05276 211 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Seca11g05276 211 SUPERFAMILY SRF-like 2 78 IPR036879 GO:0003677|GO:0046983
Seca11g05276 211 MobiDBLite consensus disorder prediction 157 180 - -
Seca11g05276 211 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 162 - -
Seca11g05276 211 Pfam K-box region 85 160 IPR002487 GO:0003700|GO:0005634|GO:0006355
Seca11g05276 211 Coils Coil 87 107 - -
Seca11g05276 211 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Seca11g05276 211 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Seca11g05276 211 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Seca11g05276 211 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Seca11g05276 211 ProSiteProfiles K-box domain profile. 87 194 IPR002487 GO:0003700|GO:0005634|GO:0006355
Seca11g05276 211 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Seca11g05276 211 Gene3D - 13 93 IPR036879 GO:0003677|GO:0046983
Seca11g05276 211 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Seca11g05276 211 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Seca11g05276 211 FunFam MADS-box transcription factor MADS-MC 13 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g05276 Seca-Chr11 149326986 149335147 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g05276 1 156 MADS-box Gene Family AT2G14210 67.949 2.93e-68 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Seca11g05276 K-box 2.2e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g05276 K09264 - zju:112492935 240.35