Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g05269 ATGCGCATAACCAGTGCGATAGCAAATAGCAACAAACTTCTTTTCCAGAATTCTCCCTTACCTCAATTGCTATGCGCTCGCCCTCATTCATCCACCAATTTGTTCGTCACAGGGCTTTCCTACGATACAAATGAAACTGTACTAAGAGACGCCTTTGGGCAACATGGGGAAATCATTGAAGTTAAAGTAATATGTGATCATGTGACTGGAAAATCAAAAGGTTATGGATTCGTTCGGTTCACTTCTGAAACTACAGCTGCCACAGCTTGCAAAGAAATGCACCACCAGATTCTGGATGGCAGACGCATTCGAGTGAGTTTTGCACACAAAGGGTAG 336 0.4345 MRITSAIANSNKLLFQNSPLPQLLCARPHSSTNLFVTGLSYDTNETVLRDAFGQHGEIIEVKVICDHVTGKSKGYGFVRFTSETTAATACKEMHHQILDGRRIRVSFAHKG. 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g05269 111 Gene3D - 8 111 IPR012677 -
Seca11g05269 111 SUPERFAMILY RNA-binding domain, RBD 27 110 IPR035979 GO:0003676
Seca11g05269 111 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 32 110 IPR000504 GO:0003723
Seca11g05269 111 FunFam Glycine-rich RNA-binding protein 2, mitochondrial 21 111 - -
Seca11g05269 111 SMART rrm1_1 33 106 IPR000504 GO:0003723
Seca11g05269 111 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 34 104 IPR000504 GO:0003723
Seca11g05269 111 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 27 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g05269 Seca-Chr11 148958783 148959878 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g05269 31 110 Eukaryotic Initiation Factors Gene Family AT4G34110 41.250 2.74e-15 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g05269 K13195 - gmx:100306540 171.014