Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g05264 ATGGGTTTAGAACTTTCACTAGCACGTCTGAAAGCTCTTGCAAAATATGCATTTGGAATGGGATTGGCTCAGGTTGTGTTATCTACTTTAGCATTTACTGCTTTTGAGCTTCCACCAAATGGGGCTATTGGAACAAAAATTTTGGAATTCCTTTTCCACTCAAGGCCTGATCTGGTGAACATCAGAAGTGTTGATGAAGCTGTAGTGATTGGTGCTGCTCTCTCTCTGTCATCTTCTGCATTTGTTCTACAGCTTCTTGCAGAGAGAGGTGAGCTTCCTACGAGATTTGGTTCAGCTACTCTTGGAATACTTCTTTTGCAGGACTTAGCTGTTGTCCCACTTTTGGTCATACTTCCAATATTAGAGAGCCAGAATATGTCTGAGGAAAGTATTTGGCCCATGCTTGCTCAAGAAAGTTTAAAGGCATTAGGTGGATTAGGTCTTCTTTCTCTTGGGGGAAAGTATATTCTCAGAAGAGTTTTTGAGGTTGTTGCAGATACAAGGAGCTCGGAGGCTTTTGTTGCTCTCTGTTTGTTGACTATTGCAGGGACTTCACTAGTCACACAGAATTTGGGCTTTAGTGATACACTTGGAGCATTTTTAGCTGGGGCAATCTTAGCAGAGACAAATTTCAGGACCCAGATTGAAGCTGACATAAGACCATTTAGGGGCTTGCTGCTTGGATTGTTTTTTCTAACTACAGGGACTTCAATTGACATGCAGCTCCTTTTGCGAGAGTGGCCAAATGTACTTTCGCTCTTGGGGGGTTTAATTGCTATCAAGACATTGATCATAACTGCGATTGGTCCTCGTGTTGGGCTTACTTTACAAGAAAGTGTAAGAATAGGATTGCTTCTATCCCAAGGAGGCGAGTTTGGATTTGTGGTATTCTCTTTAGCAAATAGGCTTGGGGTGCTTCCACTTGAGCTCAACAAGCTGCTTATAATTGTTGTTGTATTGTCAATGGCATTAACCCCATTTCTGAATGAAGCTGGAAGGAGGGCTGCTAGTTTTATTGAAGACAAATCTGATGCTGAGAATAAACAGAAAGCTTCCGGGATGGTTGACTTCAATGCTAGTGAACCTGTTGTTATCCTTGGATTTGGACAAATGGCCCAGGTCCTGGCCAATTTCCTGTCCAACCCATTGGCTTCAGGAGGAGATAGTGATGCAACAGGATGGCCTTATGTGGCATTTGATCTTGACCCCAGGGTAGTAAAGGCAGCTAGAAAACTTGGTTTTCCAATTCTCTATGGTGATGGATCACGTCCAGCCGTCCTTCAATCTGCTGGTATCCAATCTCCAAAAGCTATCATGGTTATGTACACTGGGAAGAAGAAGATAATTGAAGCTGTTCAGAGTTTACGATTGGCTTTTCCTGCAGTCCCAATCTATGCCAGAGCTCGAGATCTCAAGCATCTTTTAGATTTGAAGAAAGCAGGTGCAACAGATGCCATTTTGGAAAATGCAGAGACTAGCTTACAGCTGGGTTCTAAGCTGCTGACAGGCCTTGGGGTGATGTCTGACGATGTAGCATTTTTGAGTCAGATTATTAGAGATTCCATGGAGGTACAAGCTCAAGAAGCAATCAACCAATCAGAATATCGTGAATTAGATATTATGAAGCCACTGCAGGTGAGAGTTGCTGACGTGAAGGAGGCACGTGCACCGATGACAACAACTTCAGCAGAATATGAATTATCAGTACTGAACCAGAAAAACCAAGCTTCATTGGATAGGATTCAGAAGGAAGTAGACTCTGAAAAACAAGATTATGAACAAAATCAAGCTGTTAAATTAGAAGGAAATGGTGTTTTATGTAGCAAAGAAGACACTGAAGAAAGCTCAATGGTTGTAACTCAAGATGCTCTAGGACAGAAGAATCTGGTAGACTCATCAATCCCTTCCCACACTGCCATGGAGGAACCTGACAATGTAGATAGGGTTTCTTCCCATTAA 1959 0.4247 MGLELSLARLKALAKYAFGMGLAQVVLSTLAFTAFELPPNGAIGTKILEFLFHSRPDLVNIRSVDEAVVIGAALSLSSSAFVLQLLAERGELPTRFGSATLGILLLQDLAVVPLLVILPILESQNMSEESIWPMLAQESLKALGGLGLLSLGGKYILRRVFEVVADTRSSEAFVALCLLTIAGTSLVTQNLGFSDTLGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFLTTGTSIDMQLLLREWPNVLSLLGGLIAIKTLIITAIGPRVGLTLQESVRIGLLLSQGGEFGFVVFSLANRLGVLPLELNKLLIIVVVLSMALTPFLNEAGRRAASFIEDKSDAENKQKASGMVDFNASEPVVILGFGQMAQVLANFLSNPLASGGDSDATGWPYVAFDLDPRVVKAARKLGFPILYGDGSRPAVLQSAGIQSPKAIMVMYTGKKKIIEAVQSLRLAFPAVPIYARARDLKHLLDLKKAGATDAILENAETSLQLGSKLLTGLGVMSDDVAFLSQIIRDSMEVQAQEAINQSEYRELDIMKPLQVRVADVKEARAPMTTTSAEYELSVLNQKNQASLDRIQKEVDSEKQDYEQNQAVKLEGNGVLCSKEDTEESSMVVTQDALGQKNLVDSSIPSHTAMEEPDNVDRVSSH. 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g05264 652 Pfam Sodium/hydrogen exchanger family 1 329 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
Seca11g05264 652 Coils Coil 571 598 - -
Seca11g05264 652 PANTHER K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC 1 589 - -
Seca11g05264 652 Pfam TrkA-N domain 363 486 IPR003148 GO:0006813
Seca11g05264 652 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 362 500 IPR036291 -
Seca11g05264 652 MobiDBLite consensus disorder prediction 628 652 - -
Seca11g05264 652 FunFam Glutathione-regulated potassium-efflux system protein KefB 360 532 - -
Seca11g05264 652 ProSiteProfiles RCK N-terminal domain profile. 362 494 IPR003148 GO:0006813
Seca11g05264 652 FunFam K(+) efflux antiporter 3, chloroplastic 1 336 - -
Seca11g05264 652 Gene3D - 362 533 - -
Seca11g05264 652 Gene3D - 1 336 IPR038770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g05264 Seca-Chr11 148911916 148922377 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g05264 1 556 Inorganic Solute Cotransporters AT4G04850 80.036 0.0 864
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g05264 K03455 - gmx:100798214 1008.82