Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g05260 ATGGCTTCATCGGAGATCGAGGTCGTATCATCGGACTCCAAGCCCAACGACCAGCCTCCCATTCTCGACGTCTTCACTGCTTCTGCTCATGGCGACTTTCAGAAATTGAGGACCTTTGTGGAACAAGATGGTGCCTCCGTTTCTGTTCCCGATGTTAATGGCTATTATGCTCTTCAATGGGCTTCCCTTAACAACTTCCATGAGATTGTATACTATCTCATTCAGCATGGAGCTGATGTCAATGCCAAAGACAACATGCAACAAACGGCATTGCATTGGGCGGCAGTTCGTGGCTCAACTGCAGCTGCTGATGTGCTCTTGGAGAATGGTGCCCGGGTCGAAGCTGCAGATATAAATGGATACCGGGCAGTTCATGTTGCTGCACAATATGGGCAGACAGCTTTTTTAAATCACATTGTTGTAAAGTACCATGCTGATTTTGATGTGCCTGATAATGACGGAAGGAGTCCTCTTCATTGGGCTGCATATAAGGGGTTTGCTGATACAATAAGATTGCTTCTATTTAGAGATGCAAGTCAAGGAAGACAAGATAAAGATGGTTGTACGCCATTGCACTGGGCTGCATTAAGAGGACATGCAGAGGCATGTGCTGTGCTTGTACATGCAGGCACAAAGGAAGAATTGATGGTGAAGGACAATGCAAGATTCACTCCTGTACAGCTTGCATATGATAAAGGTCATCGGCATGTCGCCTCTTTCCTTTCTAATCAACAACGGGCTCGTAGCAACCACTGGAGAGACAAACTTTGTAGTGGGATGGTGACAGATATTGGTTATGCTCCCATTTTATTGTGTATTATAGTCTTTCTTACGATCCTCTTCATCAACTCAGTCGTTGCAGCTCCTAACCTTAAAAAGATTACTGCTGTTGTTGGACTTTGGGCATGGACAGCTCTTTCTCTAGCAGTGGGCGCTTTGATTATGTTTTATAGGTGTAGTAGTAAAGATCCAGGTTATATAAAACGGCCGGGAGATTTGGGTACTCAACGTGATACAGAGGATCCTTTGTTGAATATTGATCTAAATAGTTCATCTGTTTGGATGGGAAATTGGTCTCAACTTTGCCCTACCTGCAAGATAATAAGACCTGTCCGATCTAAGCATTGCCCTACTTGTAAGCGTTGTGTGGAACAGTTTGACCACCATTGTCCATGGATATCTAACTGTGTTGGGAAGAGGAACAAAAGAGATTTCTTTATTTTCATCTGCATGGGAACTTTGACTTCTTTCCTTTCTGCGGCCATTACAATTCAGAGAATTTGGACATCAACACCAACGTTACCGGCAGGAGAAACATGGATCCATCATGTCTTAGTAACACATCCAGGTCTTGTTGCATTTTTGGTGATGGACGCCTTTGTCTTCATTGCGGCTACGACTTTAACAATAACACAGGCTTCCATGATAGCTCGAAATGTGACCACAAATGAACTAGCAAATTCCTCCCGCTATGAGTATCTTCGTGGCCCCGATGGTCGGTTCAGAAACCCATATAATCACGGTTGTTGGAAGAATTGTGCTGATTTCCTTTTTCTGGGTTACACAAATGATGATCATATTGCTTGGCGTCCATTACAGCAGGTGGCGACTTAG 1614 0.4411 MASSEIEVVSSDSKPNDQPPILDVFTASAHGDFQKLRTFVEQDGASVSVPDVNGYYALQWASLNNFHEIVYYLIQHGADVNAKDNMQQTALHWAAVRGSTAAADVLLENGARVEAADINGYRAVHVAAQYGQTAFLNHIVVKYHADFDVPDNDGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGHAEACAVLVHAGTKEELMVKDNARFTPVQLAYDKGHRHVASFLSNQQRARSNHWRDKLCSGMVTDIGYAPILLCIIVFLTILFINSVVAAPNLKKITAVVGLWAWTALSLAVGALIMFYRCSSKDPGYIKRPGDLGTQRDTEDPLLNIDLNSSSVWMGNWSQLCPTCKIIRPVRSKHCPTCKRCVEQFDHHCPWISNCVGKRNKRDFFIFICMGTLTSFLSAAITIQRIWTSTPTLPAGETWIHHVLVTHPGLVAFLVMDAFVFIAATTLTITQASMIARNVTTNELANSSRYEYLRGPDGRFRNPYNHGCWKNCADFLFLGYTNDDHIAWRPLQQVAT. 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g05260 537 SMART ANK_2a 186 215 IPR002110 GO:0005515
Seca11g05260 537 SMART ANK_2a 221 250 IPR002110 GO:0005515
Seca11g05260 537 SMART ANK_2a 86 115 IPR002110 GO:0005515
Seca11g05260 537 SMART ANK_2a 119 149 IPR002110 GO:0005515
Seca11g05260 537 SMART ANK_2a 53 82 IPR002110 GO:0005515
Seca11g05260 537 SMART ANK_2a 153 182 IPR002110 GO:0005515
Seca11g05260 537 ProSiteProfiles Ankyrin repeat region circular profile. 86 117 - -
Seca11g05260 537 ProSiteProfiles Ankyrin repeat profile. 119 152 IPR002110 GO:0005515
Seca11g05260 537 ProSiteProfiles Ankyrin repeat region circular profile. 153 179 - -
Seca11g05260 537 ProSiteProfiles Ankyrin repeat region circular profile. 53 85 - -
Seca11g05260 537 SUPERFAMILY Ankyrin repeat 24 243 IPR036770 -
Seca11g05260 537 ProSiteProfiles Ankyrin repeat region circular profile. 186 210 - -
Seca11g05260 537 PANTHER ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED 14 523 - -
Seca11g05260 537 FunFam S-acyltransferase 9 139 - -
Seca11g05260 537 ProSiteProfiles Ankyrin repeat profile. 186 218 IPR002110 GO:0005515
Seca11g05260 537 ProSiteProfiles Ankyrin repeat profile. 153 185 IPR002110 GO:0005515
Seca11g05260 537 Gene3D - 6 137 IPR036770 -
Seca11g05260 537 Gene3D - 138 273 IPR036770 -
Seca11g05260 537 FunFam S-acyltransferase 140 248 - -
Seca11g05260 537 ProSiteProfiles DHHC domain profile. 360 410 - -
Seca11g05260 537 ProSiteProfiles Ankyrin repeat profile. 53 85 IPR002110 GO:0005515
Seca11g05260 537 ProSiteProfiles Ankyrin repeat profile. 86 118 IPR002110 GO:0005515
Seca11g05260 537 Pfam DHHC palmitoyltransferase 360 487 IPR001594 GO:0016409
Seca11g05260 537 Pfam Ankyrin repeats (3 copies) 28 116 IPR002110 GO:0005515
Seca11g05260 537 Pfam Ankyrin repeats (3 copies) 125 210 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g05260 Seca-Chr11 148856923 148865910 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g05260 27 201 Ion Channels AT2G25600 29.775 7.98e-12 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g05260 K20032 - gmx:100798740 1008.05