Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g05258 ATGGAGATTTCATCCATCAGAGGTTTACCTGATCTGGAAATGATGGAGGATCCTACCTTTCTCCATCAGTGGCACTTGAGTTCTATTAATGATCCTAGCTTACTACCAATAGCTGCTGCTTTTGGAGAGACTTTACAACAACATTCATTCACTTATCCAAACTTCAACCCCAGAACTTCCATGGAAACTGCACTTGCTGATATTGAAAGACCCACAAAACATCTCAAAATAAATACTGTTCAGACACCAGAGACACAATTTGTTACTTGCCCTGATCTTCTTTCATTTGTGGATTCCAATTACTTAAATCAGTTGGGATTAGTACTTAAGCATAAAGATGAAATGGTTTGTTCTAAAATCAATTGCACAACTCCTCAAGACATGATCTCTCAAGAAACTTTGGAGAATCAAAACTATGTCTTCAGGACTTGCCATGAGGCCAAAAAGATAGGGACACGTTCTAGGCTTTCTCAACCTCAAGACCACATAATGGCTGAAAGAAAAAGGAGAGAGAAGCTCAGCCAGAGGTTCATTGCTTTATCTGCCCTTGTTCCTGGACTACAAAAGACAGACAAAGCTTCTGTTCTTGGAGATGCAATCAAGTACTTGAAGCAGTTGCAAGAGAAAGTGAGGGCTCTTGAGGAGGAACAGAACATGAAGAAAAATGTGGAATCTGTGGTGGTTGTGAAGAAATCTCAACTATCCAATGATGTTGAAAACTCTTCTTCAGAAACTGGTGGTCCATTTGATGAGGAACTTCCTGAAATTGAAGCAAGATTTTGTGAGAGAAATGTCCTCATAAGAGTTCACTGTGAGAAGAGCAAAGGAGTTGTAGAAAATACAATCCATGAAATTGAGAAATTCCATCTAAAAGTCATCAATAGCAGTGCCATGACATTTGGGAGCTGTGCCCTTGACATAACAATTATTGCACAGATGGATGTGGGATTCTGCATGACAGTGAAGGATCTTGTGAGAAACCTACGCTCAGCTTTTTCCTCTTTTATGTGA 1011 0.3966 MEISSIRGLPDLEMMEDPTFLHQWHLSSINDPSLLPIAAAFGETLQQHSFTYPNFNPRTSMETALADIERPTKHLKINTVQTPETQFVTCPDLLSFVDSNYLNQLGLVLKHKDEMVCSKINCTTPQDMISQETLENQNYVFRTCHEAKKIGTRSRLSQPQDHIMAERKRREKLSQRFIALSALVPGLQKTDKASVLGDAIKYLKQLQEKVRALEEEQNMKKNVESVVVVKKSQLSNDVENSSSETGGPFDEELPEIEARFCERNVLIRVHCEKSKGVVENTIHEIEKFHLKVINSSAMTFGSCALDITIIAQMDVGFCMTVKDLVRNLRSAFSSFM. 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g05258 336 PANTHER BHLH TRANSCRIPTION FACTOR 41 334 - -
Seca11g05258 336 Coils Coil 196 226 - -
Seca11g05258 336 Pfam Helix-loop-helix DNA-binding domain 160 207 IPR011598 GO:0046983
Seca11g05258 336 Gene3D - 155 231 IPR036638 GO:0046983
Seca11g05258 336 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 161 221 IPR036638 GO:0046983
Seca11g05258 336 SMART finulus 163 212 IPR011598 GO:0046983
Seca11g05258 336 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 157 206 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g05258 Seca-Chr11 148834222 148836785 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g05258 157 336 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 56.831 5.43e-58 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca11g05258 HLH 2.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g05258 - - vun:114179595 464.151