Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g05254 ATGTTTGCATGGCATGTAAAAGATCACTATTTGTATAGCTATGCAACCTCTCAATTTGAAAAGATTGTCTTACACCATGTGTATTGCAATAAGATTTTAGCAAAACATGGAGAGGATAGAGCTTTCAAATTTCTTGCATATAAAACAACCATGTTCCCTCCTAGTGTTTTGTTACAACATGACGTGACAGTTTACAAGGTTATGCAGAAGCCAGGAGAGTTTGTCATCACCTTTCCCAGAGCATATCATGCTGGATTTAGTCTAGGTAATCTATCTCTCTATAAATGTGTCTGTGTCAATTTGTTTCTTCAATTTTTGGACATAATTTAA 330 0.3485 MFAWHVKDHYLYSYATSQFEKIVLHHVYCNKILAKHGEDRAFKFLAYKTTMFPPSVLLQHDVTVYKVMQKPGEFVITFPRAYHAGFSLGNLSLYKCVCVNLFLQFLDII. 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g05254 109 Gene3D Cupin 1 102 - -
Seca11g05254 109 SUPERFAMILY Clavaminate synthase-like 50 90 - -
Seca11g05254 109 PANTHER LYSINE-SPECIFIC DEMETHYLASE 1 89 - -
Seca11g05254 109 Pfam JmjC domain, hydroxylase 2 89 IPR003347 -
Seca11g05254 109 ProSiteProfiles JmjC domain profile. 1 109 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g05254 Seca-Chr11 148779647 148780112 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g05254 2 89 JUMONJI Transcription Factor Family AT1G30810 41.837 7.66e-16 70.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Seca11g05254 JmjC 6.3e-17 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g05254 - - gmx:100793144 154.066