Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g05222 ATGGGCCTCAAGGGTCAGCTTCCACAGGGCCTTCAAAATTGCTCTTCATTAGTGGGCTTAGACCTTTCACTCAATGAGCTCACAGGACCCATCCCATCCGATATACATAAATTAATCCCATATGTTACCAGCATTGATCTCTCCAATAACAATTTCACTGGTGAAATTCCCACATCTTTAGCAAACTGCAATTACCTGAATACTCTTAAACTTGATAACAACACGTTAAGTGGTCAAATCCCTCAAGAACTTGGGCTACTTCCCAGGATTAAAACAATTTCCTTTGCTAACAATCATTTGTCAGGGCCAGTTCCTGTGTTCAGAGAAGGGGTAGTTTCTGTTGATAGTTATGCTAATAATAATGGACTTTGTGGAGGGTCTTTGGAACCTTGTTCTGTCAATGAATTCCACCAATCATTCAAGACTGGCCTTATTGTTGGTTATGTGTTTTCAGTGACAATAACTATTGTTATTGTTGCTTATATCTTGTACTGCCACTTAGCACCTTACACACAACGGAAGCAGAAGAAAAAGATCCACAGAAACAAAGCTAAAGAATTGGGCAAATATATTTGTTCAATCGTAAGTTGGAAGACACGAATAGTAGCTTATCGGATACACGAATTAATACTATCACTGCAATTGCGAAAGGAAAGAAAACAGATCTCTGCACTATTGGAAAGATTGACTTCCACAATGACGTTTGAAGAACTTGGCATTGCAACTGATTCCTTTACTATTGACAATGCCATTGGGATAGGGAAGATGGGAACAATGTACCAGGGAAGACTACCTAACAATTGCTGCCTAGCTGTTCAGAGACTAAATGATTTTCTCTTTAAGAGGCGGTTCCTTTTAGAAACATTTATTCTGTGTAAGTTCAGACACAGAAATATAGTTCCCCTGTTTGGCTTCTGCAATGAAATAAATGAAAGGATTTTGGCATACCCATACATGTCAAATGGAAGACTTTCCAAATGGTTGCATCCTTTAGAATTTGAAGTTATCAGATTGAAATGGCCTCAGAGGCTTAATATAGCACTTGGGGTAGCAAGAGGCTTATCCTGGCTCCATCATAGCTGCAGTTTGCATATTGTGCATTTTAATATATGTTCACAATGTATATTGCTAGATGAGAATTTTGAACCCAAAATATCCAATTTTGGAGAGGCCAAATTTATGAATCCCAATAATGAGGATGATCTTGCCATGACATTTAAAGTAAATAATGGGAAGAAGGATGTGTATGACTTTGGAAGTGTACTTTTTGAACTGATTACAGGGGAAACATATGATGAACTTTCCCGTTCATCAAACACTACTACTAATCTCTGTGGTAACCCATCAAGGTTTTTTAATGCAATTGATAAAGCTCTTATTGGAGAAGGATTTGAAAATGAAATATGTAATCTCCTCAAAATTGCTTTGGAGTGTGTTCAGCCCTTACCAGATCAAAGGCCAACAATGCTTGAAGTTTACAACAATATGAGCAATATATGGAAGGGACGACAAAGATTCAAGGATGATTTTGATGCGCCTAGGGGATCAGAAATTAATGCTTCTGTTACTTGCACAGATGAAATTGTCGAGTTATAA 1596 0.3778 MGLKGQLPQGLQNCSSLVGLDLSLNELTGPIPSDIHKLIPYVTSIDLSNNNFTGEIPTSLANCNYLNTLKLDNNTLSGQIPQELGLLPRIKTISFANNHLSGPVPVFREGVVSVDSYANNNGLCGGSLEPCSVNEFHQSFKTGLIVGYVFSVTITIVIVAYILYCHLAPYTQRKQKKKIHRNKAKELGKYICSIVSWKTRIVAYRIHELILSLQLRKERKQISALLERLTSTMTFEELGIATDSFTIDNAIGIGKMGTMYQGRLPNNCCLAVQRLNDFLFKRRFLLETFILCKFRHRNIVPLFGFCNEINERILAYPYMSNGRLSKWLHPLEFEVIRLKWPQRLNIALGVARGLSWLHHSCSLHIVHFNICSQCILLDENFEPKISNFGEAKFMNPNNEDDLAMTFKVNNGKKDVYDFGSVLFELITGETYDELSRSSNTTTNLCGNPSRFFNAIDKALIGEGFENEICNLLKIALECVQPLPDQRPTMLEVYNNMSNIWKGRQRFKDDFDAPRGSEINASVTCTDEIVEL. 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g05222 531 Pfam Protein tyrosine and serine/threonine kinase 246 495 IPR001245 GO:0004672|GO:0006468
Seca11g05222 531 SUPERFAMILY Protein kinase-like (PK-like) 225 494 IPR011009 -
Seca11g05222 531 SUPERFAMILY L domain-like 2 114 - -
Seca11g05222 531 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 1 80 - -
Seca11g05222 531 Gene3D Ribonuclease Inhibitor 2 139 IPR032675 -
Seca11g05222 531 Gene3D Phosphorylase Kinase; domain 1 207 318 - -
Seca11g05222 531 Gene3D Transferase(Phosphotransferase) domain 1 319 516 - -
Seca11g05222 531 PANTHER LEUCINE RICH REPEAT KINASE 2 3 500 - -
Seca11g05222 531 ProSiteProfiles Protein kinase domain profile. 245 499 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g05222 Seca-Chr11 148339462 148348437 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g05222 1 499 Receptor kinase-like Gene Family AT3G28450 34.808 1.27e-83 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xa Seca11g05222 PK_Tyr_Ser-Thr 2.4e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g05222 - - gmx:100819209 653.284