Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g05210 ATGCTCAGTTTGCATGAGATGAGCAGGGCTCACTTGATTTTGATTATAGGAATATGCATAGGCTTTGTGGTTGGAGTGGGTTTGGCATTTTCAATTTTGTTCTGCTTCAGATGTGGAAGGAAGCGCACAAAGGTGGAGAAGAGCAGTTCTCAGGGAGTAGTGGCCATTCCTGTTCATGCCAAAGGGGTTGATTCCAGCACAACATTATCAGACTCCAATGTGGCTCTGGAGTCACCAAGAACATCTGAGTGGAGTAACATGCCTTTATGGTTGGAAGGACTTAGGAGGAAGAATGTAGTTTCAGCATGTGGAATTCCCAAGTATTCTTACAAAGATATACAAAAGGCTACTTCTAATTTCACAACCATCATAGGCCATGGAGCGTTTGGTCCTGTTTACAAAGCACAGATGTCTGCAGATGAGACGTTTGCAGTTAAAGTTCTTGGTACTAATTCAAGACAAGGAGAACAGGAATTTTTAACTGAGCAGGTCCTATTACTTGGAAGATTACATCACAGAAACCTTGTGGGTTTGGTGGGATATGCTGCAGAAAGAGGACAGCATATGCTCCTTTACATTTACATGAGCAACGGCAGTCTTGCTTCTCATTTGTATGATCTAGGCAAAAGTCATGAGCCATTGAGCTGGGATTTGAAACTTAGCATAGCGCTAGATGTTGCAAGGGGACTGGAATATCTACATTATGGGGCTGCTCCCCCTGTTGTGCACCGTGACATCAAGTCTTCCAACATACTGTTGGACCAGTATATGAGAGCTAAGATCACTGACTTAGGGCTTTCCAGACCAGAGATGATCACACCTCATACATCAAATGTCAGAGGAACTTTTGGATATCTTGATCCTGAGTATATCTCTACAAGAACCTTCACTAAGAAAAGTGATGTTTATAGTTTTGGTGTGCTACTGTTTGAGCTTATTACTGGCAGGAATCCACAGCAGGGGCTCATGGAATATGTAAAACTAGCAGCCATGGAAAGTGAGGGCAAGGTTGGATGGGAAGAAATTGTGGATTCGCAACTGAATCGAAAATATGATGTTCATAAGCTTAATGACATGGCTTCACTTGCACTCAAATGTGTCAATGGCGTCTCCAAAATCCGACCTTCAATGAGGGACATTGTTCAAGCATTATCTCAGCTTTGTAACAAGCATAGTAGAAAAGATAGCCGAGCATCTCCTGCTGCATTAAAGGAAGTGTCCATTGAAGTGGGCCAGCTAGAAGAATCTCATGATTTTTCATCAATTGATGAGTGTTCAAAGGTGCTACGAAGATTGCATAGCCGATAA 1308 0.4251 MLSLHEMSRAHLILIIGICIGFVVGVGLAFSILFCFRCGRKRTKVEKSSSQGVVAIPVHAKGVDSSTTLSDSNVALESPRTSEWSNMPLWLEGLRRKNVVSACGIPKYSYKDIQKATSNFTTIIGHGAFGPVYKAQMSADETFAVKVLGTNSRQGEQEFLTEQVLLLGRLHHRNLVGLVGYAAERGQHMLLYIYMSNGSLASHLYDLGKSHEPLSWDLKLSIALDVARGLEYLHYGAAPPVVHRDIKSSNILLDQYMRAKITDLGLSRPEMITPHTSNVRGTFGYLDPEYISTRTFTKKSDVYSFGVLLFELITGRNPQQGLMEYVKLAAMESEGKVGWEEIVDSQLNRKYDVHKLNDMASLALKCVNGVSKIRPSMRDIVQALSQLCNKHSRKDSRASPAALKEVSIEVGQLEESHDFSSIDECSKVLRRLHSR. 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g05210 435 SMART serkin_6 118 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g05210 435 Gene3D Phosphorylase Kinase; domain 1 87 194 - -
Seca11g05210 435 Pfam Protein tyrosine and serine/threonine kinase 120 384 IPR001245 GO:0004672|GO:0006468
Seca11g05210 435 PANTHER OS01G0750732 PROTEIN 13 397 - -
Seca11g05210 435 Gene3D Transferase(Phosphotransferase) domain 1 195 409 - -
Seca11g05210 435 SUPERFAMILY Protein kinase-like (PK-like) 99 384 IPR011009 -
Seca11g05210 435 ProSitePatterns Serine/Threonine protein kinases active-site signature. 241 253 IPR008271 GO:0004672|GO:0006468
Seca11g05210 435 FunFam calcium/calmodulin-regulated receptor-like kinase 1 195 404 - -
Seca11g05210 435 ProSiteProfiles Protein kinase domain profile. 118 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g05210 Seca-Chr11 148006871 148012159 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g05210 104 389 Receptor kinase-like Gene Family AT3G19300 41.924 3.13e-70 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Seca11g05210 PK_Tyr_Ser-Thr 8.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g05210 - - gmx:100816549 631.713