Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g05188 ATGGGACATGTATATGAAGATAGGCTATATGTGTCCCTAGATGAGTTATGTTTTAATGCTGAGAATGGTAGCAACAGGGGAAGGATGGGTAGGAAGAACTATGATGATGACACAAGGGTGTTCAAATCCAAGAACCTTGAGACAGAAAGGAAGAGGAGGGAGAAGCTCAGTACCAGGCTTCTAATGCTGAGGTCTTTAGTACCCATAATCACAAATATGAACAAGGCAACCATTATTGATGATGCTATCACATACATTCAACAGCTACAAGATGAAGTCCAGAATCTCAGCCAAGAGCTTCATGAAATGGAAGCAACCACAGAGGAAATAGAAGAGCCAAAGATAGTAGAATTTGATGCTGCTGAAGAGATGAAGAAATGGGGGATACAGGAAGAGATTGAGGTGACAAGAATGGATGGGAATAAACTTTGGGTCAAGATGATCATTGAAAACAAGAGGGGAAGGTTCAATAAATTAATGGAGACCATGCATACTTTTGGCATTGAACTGATACACACCAATGTTACAACCATGAAAGGAGCATTTCTGATTACAACATGCATACAGGGCATGAATGGTGAAACACTTGAAGTTGATAAAATCAAACAATTGATACCAGATATTATCAGAGTCATTTAG 639 0.3928 MGHVYEDRLYVSLDELCFNAENGSNRGRMGRKNYDDDTRVFKSKNLETERKRREKLSTRLLMLRSLVPIITNMNKATIIDDAITYIQQLQDEVQNLSQELHEMEATTEEIEEPKIVEFDAAEEMKKWGIQEEIEVTRMDGNKLWVKMIIENKRGRFNKLMETMHTFGIELIHTNVTTMKGAFLITTCIQGMNGETLEVDKIKQLIPDIIRVI. 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g05188 212 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 42 106 IPR036638 GO:0046983
Seca11g05188 212 Gene3D - 33 106 IPR036638 GO:0046983
Seca11g05188 212 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 40 89 IPR011598 GO:0046983
Seca11g05188 212 Coils Coil 79 109 - -
Seca11g05188 212 SMART finulus 46 95 IPR011598 GO:0046983
Seca11g05188 212 Pfam Helix-loop-helix DNA-binding domain 44 90 IPR011598 GO:0046983
Seca11g05188 212 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 26 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g05188 Seca-Chr11 147453022 147454148 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g05188 24 210 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G21330 42.564 1.17e-46 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca11g05188 HLH 8.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g05188 - - lja:Lj2g3v1278950.2 263.462