Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g05185 ATGGCTGAGGAGTTTCAAGCTAGGATTTGTGGTGAAAATTGGTGGAGTATTGATTCAACAAGAAGTGTATTTCCTCTGAGCTCATCCTCATCATCACCCTGTTCCGTGGATGCAGGAAACTATAGGCAAATTGATATCATGGATTCGAAGGAAACCAAAAAGTCTTGTGCTGAAGAGACTAATAATACTAACAATAATTTGGTTTCTGATAGTTACCTGGGTTTCTTTGAAGCACAGAAGCCACACAAGAGTGAATCATCATCAGCCAGTGGAAGTGGTAGCATATTAATTGATTCCACTTTACAGATGATGGGTTTTGGCCTCAATTCTTCAACTTCACCGAGTTGGAATCAGCCTCTATTGCCAGAGAGAAATTTTCAATCCATGCTTCAAGAAGAAACGGTTATAGATTCTTCTAATTCACAAATTCAAAGGGATCATTGGAATAGACCAAAGAGCTTTTCATCAGATGGTAGATCAATAAACCAAGTTTCCACTTTCAAGCCAACAATAATGAACCAAGAATTTTCCTTAGATCAACAACAGAGTCTAAGTTCTGTAACCAGCACTTTGTTATCATCATCTTCAGATTGTGGTAATTTCCCAATTGGATCAGCCTCATATGGTTGCCCTTCAATGTCGATGCAAAGGTTATATGAAGACCCTGGTGAAGATAATCTTCAACCACAACCACAGCAACTCTCATCACTTTTCACCAACCGCTCTATGTCCTACTCATCTAAAGCAAATTATGGGACATCCTCCAATGAACTATCTCCAATATGGTCTTCTAAAGTCTCTACCTTTTTGAAGCCCTCACCAATAGGAAAGCAACAACCTATTGGACTTCACTTTTCTAATAACACTCCTTTCTGGAATGCTTCAGCCGAGGCACTTCACGACATGAGAGCAGGTCATGCTTTTGCTGAATCAACTTTTCATGAAGGAAAACCCAATTGCCCAAGTACTCTATTAAACAAGCTTAAGAGTGAAGAAAGTTTAAACTCAGTATCAATTGGGAAGAAAATTAATGTTTGTGAAACTGCATTCAAGAGGCCAAGAATTGAAACTCCATCTACATTTCCAACTTTTAAGGTTCGGAAAGAGAAGTTAGGGGACCGGGTCACTGCTCTTCAGCAATTGGTTTCACCTTTCGGAAAGACCGACACAGCTTCCGTTCTTCATGAAGCCATTGAGTACATCAAGTTCCTTCATGATCAAGTCAGTGTTTTGAGTACTCCATATATGAAAAATGGAGCTCCCATTCAACAAAAGCAGGTACTCCAAAATGGCTGTGAAGACACAGAAGGATCAAAACAAGATTTAAAAAGCCGAGGGCTTTGTTTGGTACCCATTTCAAGCACATTCCCGGTGGCTACAGAAACCACTTCAGATCTGTGGACACCTACATTGGGAGGGTCACTCCTAAGGTAG 1434 0.4024 MAEEFQARICGENWWSIDSTRSVFPLSSSSSSPCSVDAGNYRQIDIMDSKETKKSCAEETNNTNNNLVSDSYLGFFEAQKPHKSESSSASGSGSILIDSTLQMMGFGLNSSTSPSWNQPLLPERNFQSMLQEETVIDSSNSQIQRDHWNRPKSFSSDGRSINQVSTFKPTIMNQEFSLDQQQSLSSVTSTLLSSSSDCGNFPIGSASYGCPSMSMQRLYEDPGEDNLQPQPQQLSSLFTNRSMSYSSKANYGTSSNELSPIWSSKVSTFLKPSPIGKQQPIGLHFSNNTPFWNASAEALHDMRAGHAFAESTFHEGKPNCPSTLLNKLKSEESLNSVSIGKKINVCETAFKRPRIETPSTFPTFKVRKEKLGDRVTALQQLVSPFGKTDTASVLHEAIEYIKFLHDQVSVLSTPYMKNGAPIQQKQVLQNGCEDTEGSKQDLKSRGLCLVPISSTFPVATETTSDLWTPTLGGSLLR. 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g05185 477 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 174 457 - -
Seca11g05185 477 FunFam Transcription factor bHLH123 family 365 427 - -
Seca11g05185 477 MobiDBLite consensus disorder prediction 137 160 - -
Seca11g05185 477 CDD bHLH_AtbHLH_like 362 412 IPR045239 -
Seca11g05185 477 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 355 404 IPR011598 GO:0046983
Seca11g05185 477 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 365 422 IPR036638 GO:0046983
Seca11g05185 477 Gene3D - 365 431 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g05185 Seca-Chr11 147383060 147386708 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g05185 285 477 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G61660 53.535 3.31e-53 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g05185 - - gmx:100813887 503.056