Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g05182 ATGGCGACTCCTCATCTTCCAGAACACTTCAAATGTCCAATTTCTCTCGAAATAATGTCAGACCCAGTGATCTTATCTTCTGGTCACACATTCGATCGCTCCTCAATCCAACGGTGGCTAGACGCCGGCCATCGTACGTGTCCAATTACCAAAACACCCCTCCCTGAACACCCTTCCCTAATCCCAAACCACGCACTCCGAAGCTTAATCTCCAACTACACACTCCTCTCCCCTCTCCACCAACACATTCCCCAACCCGAAACCCTAATTTCCACTCTCTCTTCTCCTTCCTCCACCTCCGATTCCAAAATCGACTCGCTCCGCCAACTCACGCGCCTCTCCAAGCGCGACGCCGCCTTCCGCCGCCGCCTTGCTGACTCCGGCGCAGTCTCCGCCGTCCTCTCCTGCCTCGAATCCGCCGCCGGCGATCCCGCGCTGCAGGAGAAGGTTTTGTCTCTTCTCCTCAACCTCAGCCTCGACGACGACAGCAAAGTTGGCCTTGTCGCCGAGGGCGCCGTCGGGAAGGTCGTCGCCGTCCTCGTCGGCGGCGCCTCGCCGGATTGCCGCGCCGTGGCCGCAACCATAATCACGAGCCTCGCCGTCCTTGAAGTGAACAAGGCAACGATTGGTGCGTTCCCGGCGGCAATCGGAGCTCTGGTGGCGATTCTCCGGGACGGGAAGGGAAGGGAGAGGAAGGAAGCTGCTACCGCGCTTTACGCACTCTGCTGTTTTCCCGATAACCGGAGAAGAGCCGTGAATTGTGGCGCGGTGCCGATTCTGCTGAGGAGTGTGGATTCTGGGCTTGAAAGGGGTGTTGAGGTTATTGGGGTTTTGGCAAAGTGTAAAGAAGGAAGGGAACAAATGGAAGCTTATGGTGGGTGCGTGCGGATTCTAGTTCGTGTGTTGAGGAATGGAAGCTCCAGAGGGATTCAGTATGCACTGTTGGCACTCACTTCGCTTTGTTTTCATAGCCAGCAAATGCTTTTGATGACCCTGCAAGAAGGGGTTTTGGAAATTGCTGTTGGGTTGCTGGAGGATGATAATGAGAAAGTGAGGAGAAATTCCTCCAATCTGATTCGGGTTCTGCGCGGAGGAAAGAATCAGTTTTGA 1110 0.5541 MATPHLPEHFKCPISLEIMSDPVILSSGHTFDRSSIQRWLDAGHRTCPITKTPLPEHPSLIPNHALRSLISNYTLLSPLHQHIPQPETLISTLSSPSSTSDSKIDSLRQLTRLSKRDAAFRRRLADSGAVSAVLSCLESAAGDPALQEKVLSLLLNLSLDDDSKVGLVAEGAVGKVVAVLVGGASPDCRAVAATIITSLAVLEVNKATIGAFPAAIGALVAILRDGKGRERKEAATALYALCCFPDNRRRAVNCGAVPILLRSVDSGLERGVEVIGVLAKCKEGREQMEAYGGCVRILVRVLRNGSSRGIQYALLALTSLCFHSQQMLLMTLQEGVLEIAVGLLEDDNEKVRRNSSNLIRVLRGGKNQF. 370
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Seca11g05182 369 FunFam RING-type E3 ubiquitin transferase 5 76 - -
Seca11g05182 369 Gene3D - 85 270 IPR011989 -
Seca11g05182 369 Gene3D - 271 363 IPR011989 -
Seca11g05182 369 SUPERFAMILY RING/U-box 5 74 - -
Seca11g05182 369 PANTHER U BOX DOMAIN-CONTAINING 7 360 - -
Seca11g05182 369 Pfam U-box domain 7 73 IPR003613 GO:0004842|GO:0016567
Seca11g05182 369 SMART arm_5 324 364 IPR000225 GO:0005515
Seca11g05182 369 SMART arm_5 117 159 IPR000225 GO:0005515
Seca11g05182 369 SMART arm_5 160 201 IPR000225 GO:0005515
Seca11g05182 369 SMART arm_5 281 322 IPR000225 GO:0005515
Seca11g05182 369 SUPERFAMILY ARM repeat 87 362 IPR016024 -
Seca11g05182 369 ProSiteProfiles U-box domain profile. 5 80 IPR003613 GO:0004842|GO:0016567
Seca11g05182 369 SMART Ubox_2 9 73 IPR003613 GO:0004842|GO:0016567
Seca11g05182 369 CDD RING-Ubox_PUB 7 54 IPR045210 -
Seca11g05182 369 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 77 IPR013083 -
Seca11g05182 369 FunFam RING-type E3 ubiquitin transferase 70 267 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Seca11g05182 Seca-Chr11 147271790 147272899 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g05182 6 364 U-box Gene Family AT4G21350 58.537 7.86e-142 405
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g05182 - - gmx:100785141 513.457