Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g05170 ATGAAGAAAGTTATAGGAGCTGCCTATGGTATAGCAAAGAGTTGTGTGGGGATAGGTTCGATAGGTGTGATGAGACCAGAGCTGGTGAAGTCTACCTTCCCTGTTGTTATGGTTGGAGTTTTGGGTATTTATGGCCTTATTATTGTTGTCATGATCAGTACTGGTATTAACCCCAAGGCCAAATCTTACTACTTCTTTGGTGGTTATGCCCATGTCTCCTATGGTCTTTATCTGCAGGCTGGCTGGCCTCTCTATTGGCATGGCTATTGGTATTGTTGGTGA 282 0.4397 MKKVIGAAYGIAKSCVGIGSIGVMRPELVKSTFPVVMVGVLGIYGLIIVVMISTGINPKAKSYYFFGGYAHVSYGLYLQAGWPLYWHGYWYCW. 94
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g05170 93 Gene3D - 1 82 IPR035921 -
Seca11g05170 93 NCBIfam V-type ATPase subunit C 4 77 IPR011555 GO:0033179|GO:0046961|GO:1902600
Seca11g05170 93 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 3 77 - -
Seca11g05170 93 Pfam ATP synthase subunit C 5 52 IPR002379 GO:0015078|GO:0033177|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g05170 Seca-Chr11 147060105 147060386 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g05170 5 76 Primary Pumps ATPases(2) AT4G38920 78.082 2.22e-32 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g05170 K02155 - vvi:100252288 110.538