Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g05169 ATGGACGGCATATTTGACTGTATAGTTGAAGAGAATGTAACAATTGAGGGTTTTGAGAACATGTCAGTCCAATTCAAGGATGATGGTCATGAACGTGTAGATGATAGTGTCGAATCACATGTTGTTTTTAATGATGGAAGTGACGGTTACTTTGTGAATGAGGAAGGCATAGGTGTTGTGTTGGTTGATGCCGAATGGGAGGAAAGGAATGTGGAAGATAATGCACATGAGGAAGATGAGGAAGTACAAAAAATTACAATTAATGGCTTCGAAGACATGAAAGATATGGATTTGTTGGCTTTCAGCCCACATGAGATTGTAAAATATGAATTTGCTAATTTAGAAGTGGCAACTATGTTCTATACTTGGTATGCCAGGGTAAACGGATTTGCAGCCCGGAAAGGTAAGATTATCACTAGTAGAAGAACTGGGAGGATCTTGCAACGAAATCATTTTTGTTATAGGGAAGGATTCCGTGATGAAAGTGGGGTTGAAGACTCTGAACCTCAGCGAGAGCCAAAAGCAAGAACTAGATGTGGGTGCAAAGCAGAGTTTAGGGCTCATGTTGATATGAACACTGGATTGTGGTATTGCTCATATTTCTTTGATAAGCATAACCATGAGCTATTAGACCCACGATTTTGTGCAATGTTACCTGCTCATAGAAGGATGGCTCCTGCTGATGTGAATCAGATGAACACTATGTTGAAGGTTGGTATTGGGCCACCCCAAATATTTGGTGCATTTGCAAACCAGTCTGGTGGGTATGAAAAGATTGGATTCAGAAAGAAAGATTTATATAACCAAATTACCCAACAAAGGCGACTTCAACAATTAGATGCTTCTTCAGCTGTGAAGTACCTTTGTGATTTAGGATTGAAGGATAACTCTATGTTTAATCGACACACCATAACTGAGGACGGTAGATTGGAACACTTGTTTTGGAGTGATGGCATTATGCAGTTAAATTACATGGTGTTTGGTGATGTGCTAGCATTTGATGCCACTTACGGTAAGAACAAGTATAAATTACCGTTAGTAGTGTTTTCTGGCGTTAATCATCATAATCGAACAACCATATTTGCTAGTGCTGTTGTTGCGAATGAAACGGAGGAAACATATGTATGGTTGTTAAGACAATTTTTAGAAGCTATGAAAGGAAAAATGCCAAGCTCGGTGATAACTGATGGAGATGTGGCAATGAAGAATGCAATTAAAGAAGTGTTTCCAAGGGATCATCATCGGTTGTGTGCATGGCACCTTGCTCGAAATGCAACCTCTAGTGTGGCAATTTCTGCCTTCACCACTGAGTTTGAATCTTGCATGTTTGCGACCTGTGATGTCGGAGAGTTTCAAAGAAGGTGGACTGAGATGGTTGCAAAGTTTGGGGTTGGAGATAAGGCCTGGGTAAGGGCCATGTATGAGAAGAGGCAAATGTGGGTTGCAGCTTACATGAGGGGAAAGTTCTTTGCAGGGTTTAGGACTACCTCAAGGTGTGAAGGATTGCACTCAGAGCTTGCAAAATTTGTTCACTCAAAGCATAATATCTGTGACTTTTTGCAGCACTTTTATCAATGTGTAGAGCGTATGCGATTCAAAGAGATGGAAGATGATTTTGCATCCATACATGGAGATCCTGTGCTGCAAAGCAGTCTTGTATCTATTGAGGAATCTGCTGCAAAGGTTCTAACAAGGCAAGTTTTTTTTCTATTTCGTCCTGTGCTAGATAAGGCTAGTATGTTGCATGTTATTGGGTGTAAAGAGTTGTATTCTGTTTTTATATACACTGTGTGCAAAAAACGTGGGGGCGGGAAGGAATATAATGTGTCTTATAACCCGTGTACAAGTGAGTTTAAATGCCCTTGTATGTGGTTTGAGTCATATGGGTTACCATGTGCACACATTGTTGTTGTTCTGGACCATTTGAACATGAAAGAGCTTCCTAGAAGTTTGGTTCTTAAAAGATGGACCAAAGGTGCAAAGGATAATGTAAGTACTAATAATGGTGAGCCTTCTATGTGTTGGGATGCCCAAAAGTTTTTCAGAACTGATGCTATGAAAGAGTTATATTGGAAGATGGCTGATCTTGATGCACATAGTGTAGACGAATTTAATGTTGCAAGGGAGAAGGCTTTGTTAGAATTAAAGTCCAAAGAAGCTCGCAGGGCAGCTGAAAGGGCTCATGCATCAGAGTCAAGACAGGGTGAGCATGAATTTTTGAGGGACCTGGTGCGTGTTAGACACAAAGGAAGCGGAGTTGGAAGCACCTCTTCAACAGGTTTGAGAGTTAAGCGAACTACGAAATGTGGCTATTGTAGAGTAGCTGGGCATAATAGGGTGACATGTCCATTACGAGTTCAAGCATCACAAATGTCACAGTCTGCAGATGAAAGAAATGACCCTGGGGAGGAAGATGACCATTGGTACAGTGCGAGCTTTCATGACAATTAA 2451 0.4088 MDGIFDCIVEENVTIEGFENMSVQFKDDGHERVDDSVESHVVFNDGSDGYFVNEEGIGVVLVDAEWEERNVEDNAHEEDEEVQKITINGFEDMKDMDLLAFSPHEIVKYEFANLEVATMFYTWYARVNGFAARKGKIITSRRTGRILQRNHFCYREGFRDESGVEDSEPQREPKARTRCGCKAEFRAHVDMNTGLWYCSYFFDKHNHELLDPRFCAMLPAHRRMAPADVNQMNTMLKVGIGPPQIFGAFANQSGGYEKIGFRKKDLYNQITQQRRLQQLDASSAVKYLCDLGLKDNSMFNRHTITEDGRLEHLFWSDGIMQLNYMVFGDVLAFDATYGKNKYKLPLVVFSGVNHHNRTTIFASAVVANETEETYVWLLRQFLEAMKGKMPSSVITDGDVAMKNAIKEVFPRDHHRLCAWHLARNATSSVAISAFTTEFESCMFATCDVGEFQRRWTEMVAKFGVGDKAWVRAMYEKRQMWVAAYMRGKFFAGFRTTSRCEGLHSELAKFVHSKHNICDFLQHFYQCVERMRFKEMEDDFASIHGDPVLQSSLVSIEESAAKVLTRQVFFLFRPVLDKASMLHVIGCKELYSVFIYTVCKKRGGGKEYNVSYNPCTSEFKCPCMWFESYGLPCAHIVVVLDHLNMKELPRSLVLKRWTKGAKDNVSTNNGEPSMCWDAQKFFRTDAMKELYWKMADLDAHSVDEFNVAREKALLELKSKEARRAAERAHASESRQGEHEFLRDLVRVRHKGSGVGSTSSTGLRVKRTTKCGYCRVAGHNRVTCPLRVQASQMSQSADERNDPGEEDDHWYSASFHDN. 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g05169 816 SMART 26again6 618 645 IPR006564 GO:0008270
Seca11g05169 816 PANTHER OS01G0519700 PROTEIN 106 667 - -
Seca11g05169 816 MobiDBLite consensus disorder prediction 797 816 - -
Seca11g05169 816 Pfam MULE transposase domain 330 424 IPR018289 -
Seca11g05169 816 MobiDBLite consensus disorder prediction 788 816 - -
Seca11g05169 816 Pfam FAR1 DNA-binding domain 120 210 IPR004330 -
Seca11g05169 816 ProSiteProfiles Zinc finger SWIM-type profile. 607 643 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g05169 Seca-Chr11 147055918 147059707 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca11g05169 MULE 2.2e-29 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g05169 - - tpra:123913749 750.355