Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g05161 ATGAATGTGATGAGACCAATGCTCCTGATGAAGTCTATTGCCCCTGTTGTTATGGCTGGAGTTTTGGGTATTTATGGTCTTATTGTTGTTTCCATAATCAATAATGGTATTAATCCCAAGAAAAAAAATCTTATTACTTCTTTGATGGTTGTGCACATCTCTCCTCTGGTCTTGCTTGCGGGGTTGGCTGGGCTCTCTGCTGGCATGGCTATTGGTATTGTTGGTGATGTTGGTGTCAAGTATAATTCTCCTTCCTTAGTATCTGCTATGAATAAATTTGAAAGTGATTTTTAG 294 0.3878 MNVMRPMLLMKSIAPVVMAGVLGIYGLIVVSIINNGINPKKKNLITSLMVVHISPLVLLAGLAGLSAGMAIGIVGDVGVKYNSPSLVSAMNKFESDF. 98
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g05161 97 PRINTS Vacuolar ATP synthase 16kDa subunit signature 13 37 IPR000245 GO:0033179|GO:0046961|GO:1902600
Seca11g05161 97 PRINTS Vacuolar ATP synthase 16kDa subunit signature 65 91 IPR000245 GO:0033179|GO:0046961|GO:1902600
Seca11g05161 97 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 1 83 - -
Seca11g05161 97 NCBIfam V-type ATPase subunit C 1 79 IPR011555 GO:0033179|GO:0046961|GO:1902600
Seca11g05161 97 Pfam ATP synthase subunit C 4 33 IPR002379 GO:0015078|GO:0033177|GO:1902600
Seca11g05161 97 Gene3D - 1 93 IPR035921 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g05161 Seca-Chr11 146988977 146989270 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g05161 1 85 Primary Pumps ATPases(2) AT2G16510 63.529 2.35e-27 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g05161 K02155 - csin:114292490 88.5817