Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g05150 ATGGCTTCTTTGTGGTTTCTCAAACTAGCTCTCAAATGCTTTGATCATTTCGCATGGCCTCTTCTTGCTCTGGGGTATCCTCTGTGTGCTTCAGTACAAGCAATCGAGAATGATTCCTATACAGAAACCAGGGATTTGATCTCATATTGGATACTTCTCTCATTATTATACCTCTTTGAGTATTTTTTAATGAGTCTAATTCAATGGTTCCAGTTCTGGCCTTACATTAAGCTCATGATCATCTTCTGGCTCATCATACCAGATTTTGGACGAGCTTCATATGTCTATAATAACCTTATTCGCCCATGCATTTCCATTAACTGGAGGAAGTTTTTTGAGGAGAAAGAAAACATTTTACTTCATGCAGATTATAGAAAAGAGAATGCAACTGAAGCCTTAGAGAAGCTCATTGCTAGCAAGGACACAACTTATAAACCTGAGGCAGAAGCAACTAATGCTGTTAGAGCTACTTATAAAGAAATGCTACAGCATCTTGTGCAGACAAACGGAAAAAGGCTCCAGACAGAGCGCAAAGACATCAAAGATTTGGAGGTTATTGAGAAAAAGGAAATTCCTGCAGTCAAGCAAGTTATTCCTGTCATGCCTAACCTTGCAACAAGTCATAATGTTTCAACATCAACACCAATGGTAGAAACTAGAGGAATGGCAGGGAAAGACAGATCTGGTGGGGAGCTTCCTCAGAGTTCTACTACACACAAGGAAGTGCAGAAAGAGTGGACTTGTGCTTTATGTCAGGTAACAGCATCGAGTGAGCAAAACTTGAATTCTCACCTGCATGGAAGGAGACACAGGGAAGCTTCTATAGCTCTGAAAGCAAAGACTAAAGCTGCTTCACAGAAGCTGAAAATCAATCAGTCCAAAGAGGAATTGAAGCAGAAGGACATTAACAACCAGCTAAATTCCAAGACCAAGAATGGAGGAGAGAATATTGTTAACAAGGGGTTGAAAGGAAATGTAGTCATGGATCATAAGAAGGTGCAAGCACTGCAAAAGAACCTGTCTGCACAACCTGTTAGGATTTCCAAATTAATATGTGAAGCCTGCAATGTTACATGCACAAGTGTGGTTGACATGACCATTCACTTAAATGGGAAGAAGCACTTGGCTAATACTCAAAGTTAA 1143 0.4016 MASLWFLKLALKCFDHFAWPLLALGYPLCASVQAIENDSYTETRDLISYWILLSLLYLFEYFLMSLIQWFQFWPYIKLMIIFWLIIPDFGRASYVYNNLIRPCISINWRKFFEEKENILLHADYRKENATEALEKLIASKDTTYKPEAEATNAVRATYKEMLQHLVQTNGKRLQTERKDIKDLEVIEKKEIPAVKQVIPVMPNLATSHNVSTSTPMVETRGMAGKDRSGGELPQSSTTHKEVQKEWTCALCQVTASSEQNLNSHLHGRRHREASIALKAKTKAASQKLKINQSKEELKQKDINNQLNSKTKNGGENIVNKGLKGNVVMDHKKVQALQKNLSAQPVRISKLICEACNVTCTSVVDMTIHLNGKKHLANTQS. 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g05150 380 PANTHER OS06G0651300 PROTEIN-RELATED 207 379 - -
Seca11g05150 380 SUPERFAMILY beta-beta-alpha zinc fingers 343 378 IPR036236 -
Seca11g05150 380 Pfam TB2/DP1, HVA22 family 27 103 IPR004345 -
Seca11g05150 380 SMART ZnF_U1_5 243 277 IPR003604 GO:0003676|GO:0008270
Seca11g05150 380 SMART ZnF_U1_5 347 380 IPR003604 GO:0003676|GO:0008270
Seca11g05150 380 Gene3D Classic Zinc Finger 231 274 - -
Seca11g05150 380 Gene3D Classic Zinc Finger 328 380 - -
Seca11g05150 380 SUPERFAMILY beta-beta-alpha zinc fingers 232 280 IPR036236 -
Seca11g05150 380 SMART c2h2final6 246 270 IPR013087 -
Seca11g05150 380 SMART c2h2final6 350 374 IPR013087 -
Seca11g05150 380 Pfam Zinc-finger of C2H2 type 351 374 - -
Seca11g05150 380 Pfam Zinc-finger of C2H2 type 246 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g05150 Seca-Chr11 146919821 146923381 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g05150 245 377 C2H2 Transcription Factor Family AT5G61190 28.571 5.41e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g05150 - - lja:Lj4g3v0387230.3 417.542