Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g05145 ATGCTCCTTCCAGTACTAAAGCGAGTAAGTGAAGACCAGGATACTGAGCTAAAAACAGAAGCAAAAATTAAAGGGAAAAATATTTCTGATATTGAAATCAAGCAGGTTGAATTTGGCTGCAATGAGAAAAATTACTGCAATCACTGCAAAACACCCGTCCTGGATCTCCATAGAAGCTGCCCTAATTGTTCATATACCCTATGCTTAAGTTGTTGTGAGGAATTAAATCGGGGAAGACCTTCTGGAGAAATTGCCTCATCTATGTTCAAGCTACCTGATAAAATGAAAGCTTGTGTTGCCAGTGAGAGCAATACATTGGATCAGAAGGCCATTTCTAGTGGCAATTTAACCACTACATCAGTATTGCCTGACTGGACAAACTGTAATGTTCTTGACAGTGTATCATGCCCTCCTACCGAGCTTGGTGGTTGTGGTAATAGCCACCTTGATTTGAGATGTGTTTTCCCCTCTACTTGGATCAAAGATATGGAAGTGAAGGCAGAAGAAATTGTTTGCAGCTATGACTTCCCTGAAACTTTGGATAAAAGTTCAAGCTGCTCCCTTTGTTTTGACACCGATCATAATACTATCAGATATAAGCAGTTACAAAAAGCAGCTCTAAGAGAAGATTCAACAGACAATTGCTTGTTTTGCCCCACAGTTTTGGACATCAGTGGTGATAACTTTGAGCACTTTCAGAAACACTGGGGAAAAGGCCATCCTATAGTGGTCCAAGATGTGCTCCAGAGTATGTCAAACCTCACTTGGAATCCACTGATCATGTTCTGTACTTATCTCGAGCAGAGCATTACAAGATATGAGAATAATAAGGAATTACTTGAATCTTGTTTAGATTGGTGTGAGGTGGAAATTGACATTAGGCAGTATTTTACTGGGTCTCTCAAATGTCGTCCTCAGAAAAACACATGGCATGAGATGTTGAAACTAAAGGGGTTGCTATCTTCCCAAATATTCAAAGAGCAGTTTCCAGCTCATTTTGCTGAGTTAATTGAAGCTCTACCAGTTCAAGAATACATGAATCCCGTGTCTGGTCTTCTGAATTTAGCTGCAAATTTGCCACCTGGGAGTGCAAAACATGACATTGGGCCATATGTCTATATTTCATATGGTTGTGCTGAGGAAGAAGCCGACTCTGTCACAAAACTCAGCTATGACTCATATGATGTGGTTAATATTTTGACGCATACCGCGGATGTCCCCCTCTCTACAGAACAGCTGACGAAAATAAGAAAATTACTGAAAAAGCACAAAGCTCTGTGTCAAATGGAGTCTGTTGCTACTGAGCAGCTACAGGAACAGAAAGTGAAAGGAATGACATTATCCCATGCAGAAGAAATGGAACAAAAAGGCTTGCGGAGTATGGTGAAAGAAGAAATGGACTTTTTCAGGAGAGTCAATAGAACATCTTGCATCTCAACTGAAGCTAAAAACGCTGCTGGCCAGAGTACAGACAGCAATATTTCCCAGGATGGAGAATGTGATTCTGATTCTGATTCTGAACCCTCTTCACTTCTCCATGGGACTGTGCAAACAACTGACTTGGGTATACACAATAATTCTAGATATCCCTTTGAAAGCTCAAACAGTGATAAAAATAAGTTTACTGAGCATTCAGGAGCCCAGTGGGATGTCTTTCGTAGGCAAGATGTACCAAAGCTCATAGAATACCTTAAAAGACACTATGATGAATTTTCTCACACCCCTGACTATCACAAGAAGATGGTTCATCCAATTCTAGATCAGAGCATTTTTCTTGATAGTACCCACAAAATGAGACTTAAGGAGGAGTTTAAGATTGAACCATGGACTTTTCAGCAACATGTTGGAGAAGCTGTCATCATTCCTGCTGGATGTCCATACCAGATAAGGAATCCTAAGTGTTGTGTTCATGCTGTGTTGGAATTTGTGTCCCCTGAAAATGTTACTGAGTGTATCCAGTTGATTGATGAGGTCCGGCTATTACCTGAAGACCATAAAGCAAAAGTAGACAAGCTGGAGGTGAAGAAAATGGCGCTTCATAGCATGAGTGCAGCAATTAACGAAATACGCCAGCTAACATGCAAAACATGA 2091 0.406 MLLPVLKRVSEDQDTELKTEAKIKGKNISDIEIKQVEFGCNEKNYCNHCKTPVLDLHRSCPNCSYTLCLSCCEELNRGRPSGEIASSMFKLPDKMKACVASESNTLDQKAISSGNLTTTSVLPDWTNCNVLDSVSCPPTELGGCGNSHLDLRCVFPSTWIKDMEVKAEEIVCSYDFPETLDKSSSCSLCFDTDHNTIRYKQLQKAALREDSTDNCLFCPTVLDISGDNFEHFQKHWGKGHPIVVQDVLQSMSNLTWNPLIMFCTYLEQSITRYENNKELLESCLDWCEVEIDIRQYFTGSLKCRPQKNTWHEMLKLKGLLSSQIFKEQFPAHFAELIEALPVQEYMNPVSGLLNLAANLPPGSAKHDIGPYVYISYGCAEEEADSVTKLSYDSYDVVNILTHTADVPLSTEQLTKIRKLLKKHKALCQMESVATEQLQEQKVKGMTLSHAEEMEQKGLRSMVKEEMDFFRRVNRTSCISTEAKNAAGQSTDSNISQDGECDSDSDSEPSSLLHGTVQTTDLGIHNNSRYPFESSNSDKNKFTEHSGAQWDVFRRQDVPKLIEYLKRHYDEFSHTPDYHKKMVHPILDQSIFLDSTHKMRLKEEFKIEPWTFQQHVGEAVIIPAGCPYQIRNPKCCVHAVLEFVSPENVTECIQLIDEVRLLPEDHKAKVDKLEVKKMALHSMSAAINEIRQLTCKT. 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g05145 696 SMART cupin_9 329 659 IPR003347 -
Seca11g05145 696 MobiDBLite consensus disorder prediction 482 539 - -
Seca11g05145 696 Gene3D Cupin 220 668 - -
Seca11g05145 696 MobiDBLite consensus disorder prediction 482 497 - -
Seca11g05145 696 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 2 694 IPR045109 GO:0032454|GO:0033169
Seca11g05145 696 SUPERFAMILY Clavaminate synthase-like 228 684 - -
Seca11g05145 696 ProSiteProfiles JmjC domain profile. 348 659 IPR003347 -
Seca11g05145 696 MobiDBLite consensus disorder prediction 505 536 - -
Seca11g05145 696 Pfam JmjC domain, hydroxylase 545 637 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g05145 Seca-Chr11 146795368 146799677 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Seca11g05145 JmjC 1.5e-09 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g05145 K15601 - gmx:100810673 1129.78