Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g05137 ATGGGTGATGAAGTCTTCGCCGGAGAATCCAAAACGACGGTGGCACAACCCACCGGAGCTTCCCTCCTCCGGCGAGCACTGGAGCTTATCTGCTCCTTGCTCTCTCTCTCACACTCGATCAGAGTCTTCGCCGGAAAATGGCAACTCATTCGGAACAAGCTTGAGGAGCTTCACTCCGGTCTAATCGCCGCCGAGAATTGCGATTCCGGCGAGAACCCTTCTCTTTCCCGGTTGGTTCCTTCCATTGTAGCCACCGTTAAGGAATGTCACGATCTGGGTCAGCGCTGCGTCGATTTCTCCTACAGTGGGAAGCTTCTGATGCAGAGTGATTTGGACATGGCGTTTGCGAAGCTCGATGGTCTCGCGAAGAAGCTCTCAGAGATATACAAAACGGGTATTTTGACAAATGGGTATGCGTTGGTTGTGTCAAAACCGAGTCTTGGTGCTTCTAAAGAGGACATGAGGTTCTATGTGAGAGACCTTTTGACAAGGATGAAGATTGGTGATTTGGGTATGAAGAAACAGGCCTTGAGGAACCTTCTAGAGGTTGTGGTGGAGGATGAGAAGTATGTGAAGGTGATTGTAGATGTTGGTGATGTTGTTCATTTGTTAGTGAGTTTTCTTGGTTCAGCTGAGGAGGAAATCCAAGAGGAAAGTGCTAAGGTTGTTTCTGTTGTTGCGGGTTTTGATTCCTATAAAGGGGTTTTGGTTGGTGCTGGGGTTATTGCGCCTTTGGTTCGGGTTTTGGATTGTGGTAGTGAGTTAGGGAAGGTTGCAGCTGCCAGGTGTTTGATGAAATTAACTGAGAATTCTGATAATGCTTGGTGTGTTTCAGCTCATGGGGGTGTCACTGCCTTGTTGAATATTTGTGGGAATGCAGATTGTAAAGGGGATTTGGTTGGTCCTGCTTGTGGGGTGTTAAGGAATCTTGTTGGTGTTGAGGAGATAAAGAGGTTTATGGTTGAGGAAGGTGCTGTGTCCACGTTTATTGGGCTTGTGAAATCAAAGGAGGAAACTATTCAGGTGAATTCCATTGGGTTCATTCAGAATATTGCCTCTGGTGATGAGGTTGTTAGGCAGATGGTGATAAGAGAAGGTGGAATCCGTGCTTTGTTGCGAGTTTTGGATCCTAAATGGTCCTATTCTTCTAAAACCAGGGAGATAGCAATGAGGGCTATTGAGAATTTGTGTTTTTCTTCATCAAGTTCTATAAGTATTTTGATGAGTTATGGTTTTGTGGATCAGCTTTTATATTATGTTCGAAATGGGGAGGTTTCAATTCAAGAGTTGGCTCTGAAAGTGGCATTTAGATTGTGTGGAACATCAGAGGAAGCTAAGAAAGCAATGGGTGATGCAGGTTTTATGTCAGAGCTTGTTAAGTTTCTCAATGCAAAATCATTTGAGGTTAGAGAAATGGCAGCTGAAGCACTCTCTAGCATGGTTATGGTACCTAGAAATAGAAAGAGATTTGTTCAGGATGATCATAACATAGCCCTTCTTCTACAATTGCTTGACCCAGAGGAGGGAAATTCAGGTAACAAAAAGTTCTTAATATCTACCTTAATGTCATTGACAAGTTGCAATAGTGGAAGGAAAAAAATTGTTAGTTCTGGATATGCCAAAAACATTGAGAAACTTGCAGAGGCTGAAGTTTCTTCTGATGCCAAAAGACTTGTCAGGAAGCTATCCACAAACAGATTCCGCAGTATGTTGAATGGAATCTGGCACTCATGA 1734 0.4389 MGDEVFAGESKTTVAQPTGASLLRRALELICSLLSLSHSIRVFAGKWQLIRNKLEELHSGLIAAENCDSGENPSLSRLVPSIVATVKECHDLGQRCVDFSYSGKLLMQSDLDMAFAKLDGLAKKLSEIYKTGILTNGYALVVSKPSLGASKEDMRFYVRDLLTRMKIGDLGMKKQALRNLLEVVVEDEKYVKVIVDVGDVVHLLVSFLGSAEEEIQEESAKVVSVVAGFDSYKGVLVGAGVIAPLVRVLDCGSELGKVAAARCLMKLTENSDNAWCVSAHGGVTALLNICGNADCKGDLVGPACGVLRNLVGVEEIKRFMVEEGAVSTFIGLVKSKEETIQVNSIGFIQNIASGDEVVRQMVIREGGIRALLRVLDPKWSYSSKTREIAMRAIENLCFSSSSSISILMSYGFVDQLLYYVRNGEVSIQELALKVAFRLCGTSEEAKKAMGDAGFMSELVKFLNAKSFEVREMAAEALSSMVMVPRNRKRFVQDDHNIALLLQLLDPEEGNSGNKKFLISTLMSLTSCNSGRKKIVSSGYAKNIEKLAEAEVSSDAKRLVRKLSTNRFRSMLNGIWHS. 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g05137 577 SMART arm_5 354 398 IPR000225 GO:0005515
Seca11g05137 577 SMART arm_5 442 482 IPR000225 GO:0005515
Seca11g05137 577 SMART arm_5 229 269 IPR000225 GO:0005515
Seca11g05137 577 SMART arm_5 313 353 IPR000225 GO:0005515
Seca11g05137 577 SMART arm_5 187 228 IPR000225 GO:0005515
Seca11g05137 577 SMART arm_5 270 312 IPR000225 GO:0005515
Seca11g05137 577 Gene3D - 157 566 IPR011989 -
Seca11g05137 577 SUPERFAMILY ARM repeat 159 558 IPR016024 -
Seca11g05137 577 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 18 576 - -
Seca11g05137 577 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 281 325 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g05137 Seca-Chr11 146607314 146609047 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g05137 204 434 U-box Gene Family AT3G54790 25.431 6.07e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g05137 - - gmx:100809382 903.664