Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g05125 TTATTTCTAAACTTGAGCAATGAAGGTGGCTTTTCATGTGAAGTTCAGCTTCTTGATCTTAGGGGTGAAGTTCAATTTATTTCATTTGGGGGCTTTTCATGTGAAGTTCAGCTTCTTGATCTTAGGGGTGGAGTTGACATAAGTAGTGATCTCATATGGACACAGTGTCTCCCATGCATACTATGTTACAACGAAACTGTTCCTCTCTTTGATACTAGCCATTCCTCATCCTACAGAATCATACCATGTCAGTCTAGTTTCTACCAAGCAATTCCTATTGTAACAAAAAGTCCTGAAACATTTTACTATCTATCATTGGAGGCAGCAAGTATAACAACTATTGTAAGTGGAACCACTTCAAAGCTTATGATTGAAGACACTGGTGAGAGATTGAAGGATTTTGCACAGAGCTTGAACTTACCCTTCTCCTTCAATATAGTTATGGTATCAGACATGCTACACCTCAGAGAAGATCTTTTTGAAATAGATCCTGAGGAAACAGTTACAGTTTACTCTCAGTTTGCACTTAGAAGCAAGATTCAACAATCAGACCAGCTTGAATCTCTCATGAGAGTGATTAGAACCATTAGTCCTGTAGTAATGGTGGTAGCTGAACTTGAGGCTAACCACAATTCTACATCTTTTGTGAACCGTTTCATTGAAGCTCTTTTCTACTTCAGTGGATTCTTTGATTTTCTTGAGGCCTGTATGGAATGGGATGAGCAGAACCGAATGGATATAACATTCCCTTTTAATTAA 759 0.3821 LFLNLSNEGGFSCEVQLLDLRGEVQFISFGGFSCEVQLLDLRGGVDISSDLIWTQCLPCILCYNETVPLFDTSHSSSYRIIPCQSSFYQAIPIVTKSPETFYYLSLEAASITTIVSGTTSKLMIEDTGERLKDFAQSLNLPFSFNIVMVSDMLHLREDLFEIDPEETVTVYSQFALRSKIQQSDQLESLMRVIRTISPVVMVVAELEANHNSTSFVNRFIEALFYFSGFFDFLEACMEWDEQNRMDITFPFN. 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g05125 252 Pfam Xylanase inhibitor N-terminal 45 89 IPR032861 -
Seca11g05125 252 SUPERFAMILY Acid proteases 45 104 IPR021109 -
Seca11g05125 252 Gene3D Acid Proteases 38 154 IPR021109 -
Seca11g05125 252 ProSiteProfiles GRAS family profile. 1 252 IPR005202 -
Seca11g05125 252 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 110 240 IPR005202 -
Seca11g05125 252 Pfam GRAS domain family 111 245 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g05125 Seca-Chr11 146106570 146107918 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g05125 124 245 GRAS Transcription Factor Family AT3G03450 35.772 6.10e-19 84.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Seca11g05125 GRAS 3.6e-30 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g05125 - - gmx:100798926 209.534