Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g05124 ATGAAACGCTCAGGCGATGACGTGGCTGTAACCGCAACGAAGCCAGTGTTCCTAACCAAAGCCCAGCGCGAGCAGTTGGCCCTTCAACGCCGTCACGAAGAAATCGCCGAGCAGAAGCGCCGCCAGGAACAGCTCCTTTCTGGTAACCGCTCTTCTGATCCCAAACCCTCCTCTGAATCCGACCGCCGCGACCGCGACCGAGATAGGGATAGGGATAGAGACAGGGATAGGGATAGGGATAGGGATAGGGATAGGGATAGAGACAGGGACAGGGAGGCCCGCGAAACCGAACGGCGTAACCGAGATAGGGAGCGCGAAGAAGAGAGTAAGGCTCGCGAGCGTGCTCGCTTGGAGAAATTGGCTGAGCGGGAGCGCGAGAAAGAGCTGGATGCCATCAAGGAGCAGTACCTTGGCTCCAAGAAGCCTAAGAAACGGGTTATCAAGCCTAGTGAGAAGTTTCGCTTCTCGTTCGATTGGGAAAACACCGAGGACACGTCCCGCGACATGAATTCCCTTTACCAGAACCCTCACGAGGCCCAGCTTCTGTTCGGGCGAGGGTTCCGCGCGGGGATGGACCGCCGTGAGCAGAAGAAGCTGGCTGCCAAGAACGAGAAGGAGATGCGGGAGCAAATCCGGAAGAAGGACGGCGTGGAGGAGAAGCCGGAGGAGGCGGACGCGCAGAGGCGGAAAGAGGCTGCTGCTGATCTGTACGACACCTTTGATATGAGGGTAGACCGCCATTGGAGTGAGAAGAAGCTGGAAGAGATGACAGAGAGGGATTGGCGTATCTTCAGGGAGGACTTCAACATCTCCTACAAGGGTTCCAAGATTCCTCGCCCCATGCGTAGCTGGATTGAGAGCAAGTTGAGCAATGAGCTCTTGAAGGCTGTGGAGAAGGCTGGTTACAAGACCCCATCTCCCATTCAGATGGCAGCTATTCCCCTTGGCTTGCAGCAGCGTGATGTAATTGGCATTGCTGAGACTGGTTCCGGGAAGACTGCTGCATTTGTTCTTCCCATGTTGAGTTACATCACTAGGCTTCCTCCCATGAGTGAGGAGAACGAGGCTGAGGGTCCCTATGCTGTTGTCATGGCACCCACTCGGGAGCTTGCGCAGCAGATTGAGGATGAGACTGTTAAGTTTGCTCAGTATCTGGGCATCAAAGTGGTTTCCATTGTTGGTGGACAGTCCATTGAGGAGCAAGGGTTTAAGATAAGGCAAGGCTGTGAAATTGTGATTGCCACACCCGGTCGTTTGATTGATTGCTTGGAACGACGCTATGCTGTTCTCAACCAGTGCAATTATGTTGTTCTTGATGAGGCTGACCGTATGATTGATATGGGGTTTGAGCCACAGGTTATGGGTGTGCTGGATGCCATGCCTTCCAGCAATCTGAAACCTGAGAATGAAGATGAAGAGCTTGACGAGAAGAAGATTTACAGGACCACTTATATGTTTAGCGCCACCATGCCACCCGCTGTGGAGAGGCTTGCTAGGAAATATTTAAGGAACCCTGTTGTGGTAACCATAGGTACTGCTGGAAAAGCAACTGACTTGATCAGCCAGCATGTCATCATGATGAAGGAATCTGAGAAATTTCCTAAACTTCAGAGATTGCTTGATGAGCTTAATGACAAGACTGCAATTGTATTTGTTAACACCAAGAAGAATGCTGATATGGTTGCCAAAAATCTGGATAAGGAAGGCTATCGTGTGACTACTTTGCATGGAGGGAAATCGCAGGAGCAGAGGGAGATTAGTCTTGAAGGATTTAGGACCAAGAGATATAATGTTCTTGTAGCAACTGATGTTGCTGGACGTGGGATTGACATACCTGATGTGGCTCATGTCATCAACTATGATATGCCTGGGAATATTGAAATGTACACTCACCGCATTGGGCGTACTGGTCGTGCAGGAAAGACAGGTGTGGCTACAACCTTCCTGACTCTTCATGACACTGATGTCTTTTATGACCTCAAACAGATGCTCATTCAAAGTAATAGTCCTGTTCCACCTGAATTGGCAAGGCATGAAGCTTCAAAATTCAAGCCAGGAACTATTCCCGACAGACCACCTAGACGTAATGACACTGTTTTTGCACATTAG 2109 0.5055 MKRSGDDVAVTATKPVFLTKAQREQLALQRRHEEIAEQKRRQEQLLSGNRSSDPKPSSESDRRDRDRDRDRDRDRDRDRDRDRDRDRDRDREARETERRNRDREREEESKARERARLEKLAEREREKELDAIKEQYLGSKKPKKRVIKPSEKFRFSFDWENTEDTSRDMNSLYQNPHEAQLLFGRGFRAGMDRREQKKLAAKNEKEMREQIRKKDGVEEKPEEADAQRRKEAAADLYDTFDMRVDRHWSEKKLEEMTERDWRIFREDFNISYKGSKIPRPMRSWIESKLSNELLKAVEKAGYKTPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLSYITRLPPMSEENEAEGPYAVVMAPTRELAQQIEDETVKFAQYLGIKVVSIVGGQSIEEQGFKIRQGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVMGVLDAMPSSNLKPENEDEELDEKKIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLISQHVIMMKESEKFPKLQRLLDELNDKTAIVFVNTKKNADMVAKNLDKEGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTLHDTDVFYDLKQMLIQSNSPVPPELARHEASKFKPGTIPDRPPRRNDTVFAH. 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g05124 702 MobiDBLite consensus disorder prediction 194 230 - -
Seca11g05124 702 CDD SF2_C_DEAD 520 649 - -
Seca11g05124 702 Gene3D - 243 512 IPR027417 -
Seca11g05124 702 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 535 679 IPR001650 -
Seca11g05124 702 FunFam probable ATP-dependent RNA helicase DDX23 513 701 - -
Seca11g05124 702 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 282 310 IPR014014 GO:0003724
Seca11g05124 702 CDD DEADc_DDX23 293 509 - -
Seca11g05124 702 MobiDBLite consensus disorder prediction 55 141 - -
Seca11g05124 702 Pfam DEAD/DEAH box helicase 307 497 IPR011545 GO:0003676|GO:0005524
Seca11g05124 702 FunFam probable ATP-dependent RNA helicase DDX23 243 512 - -
Seca11g05124 702 Coils Coil 526 546 - -
Seca11g05124 702 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 313 508 IPR014001 -
Seca11g05124 702 Coils Coil 194 220 - -
Seca11g05124 702 Gene3D - 513 700 IPR027417 -
Seca11g05124 702 Coils Coil 18 38 - -
Seca11g05124 702 Pfam Helicase conserved C-terminal domain 532 640 IPR001650 -
Seca11g05124 702 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 437 445 IPR000629 -
Seca11g05124 702 SMART helicmild6 559 640 IPR001650 -
Seca11g05124 702 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 358 661 IPR027417 -
Seca11g05124 702 Coils Coil 94 130 - -
Seca11g05124 702 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 218 679 - -
Seca11g05124 702 MobiDBLite consensus disorder prediction 677 702 - -
Seca11g05124 702 SMART ultradead3 301 523 IPR014001 -
Seca11g05124 702 MobiDBLite consensus disorder prediction 29 145 - -
Seca11g05124 702 MobiDBLite consensus disorder prediction 29 46 - -
Seca11g05124 702 MobiDBLite consensus disorder prediction 670 702 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g05124 Seca-Chr11 146103325 146105454 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g05124 280 662 Eukaryotic Initiation Factors Gene Family AT3G19760 31.510 9.55e-61 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g05124 K12858 - gmx:100792810 1203.73