Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g05106 ATGAATGACCTGTTTTCAAATTCCTTCAGAAAGTACAGTGACCTGCAGCAGCAGGCTTACCTTGATGATGTGGAAGCTGGGAAGGAAAGTATCAATCTTGATAAATTCTTTGAAGATGTGGAGAATGTAAAAGAAGACATGAGAACAGTTGAGAAGCTCTATAGGAAATTGCAAGAGGCCAATGAAGAGAGCAAAATTGTGCACAATGCTAAAACCATGAAGGAACTTAGAGCCAGGATGGACAAAGATGTAGAGCAAGTCCTTAAACGTGTCAAGATCATTAAAGGCAAGCTTGAAGCCTTAGAGCGTTCCAATGCAGCTAACAGAAACCTTCCAGGGTGTGGTCCTGGTTCTTCAGCTGATAGAACCAGGACTTCAGTGGTTAGTGGCTTGGGAAAGAAACTCAAGGACATGATGGATGATTTTCAAGGGTTGAGAGCAAGAATGCAACAAGAGTATAAGGAAACAGTTGAAAGAAGGTATTTCACAATCACAGGAGAGAAAGCTAATGAAGAAACTATAGAGAATTTGATAGCAAGTGGAGAAAGTGAGAGTTTTCTCCAAAGGGCAATTCAAGAACAAGGCAGGGGTCAGATAATGGACACCATATCAGAGATTCAAGAAAGGCATGATGCTGTTAAGGAAATAGAGAAAAACTTGATTGAGCTTCATCAGGTTTTTTTGGACATGGCAGCTCTTGTAGAGTCTCAAGGTCAACAACTAAATAACATAGAGAGTCATGTTGCACATGCTAGTTCTTTTGTAAGAAGAGGCACAGATCAACTTCAGGAAGCTAGAGAGTATCAAAAGAGCTCTAGGAAGTGGACTTGTTATGCTATACTTCTTGGTATTGTCCTCATTGTTGTGCTCCTATTTCCTCTCTTGTCATCAATTTTACCTCATTTGTTCTTGAGATGA 918 0.402 MNDLFSNSFRKYSDLQQQAYLDDVEAGKESINLDKFFEDVENVKEDMRTVEKLYRKLQEANEESKIVHNAKTMKELRARMDKDVEQVLKRVKIIKGKLEALERSNAANRNLPGCGPGSSADRTRTSVVSGLGKKLKDMMDDFQGLRARMQQEYKETVERRYFTITGEKANEETIENLIASGESESFLQRAIQEQGRGQIMDTISEIQERHDAVKEIEKNLIELHQVFLDMAALVESQGQQLNNIESHVAHASSFVRRGTDQLQEAREYQKSSRKWTCYAILLGIVLIVVLLFPLLSSILPHLFLR. 306
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Seca11g05106 305 FunFam Syntaxin 132 196 296 - -
Seca11g05106 305 Coils Coil 40 70 - -
Seca11g05106 305 Coils Coil 84 104 - -
Seca11g05106 305 SMART tSNARE_6 198 265 IPR000727 -
Seca11g05106 305 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 30 160 - -
Seca11g05106 305 CDD SNARE_syntaxin1-like 202 264 - -
Seca11g05106 305 Pfam Syntaxin 35 238 IPR006011 GO:0016020
Seca11g05106 305 PANTHER SYNTAXIN 41 287 IPR045242 -
Seca11g05106 305 Gene3D - 33 160 - -
Seca11g05106 305 SMART SynN_4 28 154 IPR006011 GO:0016020
Seca11g05106 305 CDD SynN 33 190 IPR006011 GO:0016020
Seca11g05106 305 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 203 265 IPR000727 -
Seca11g05106 305 ProSitePatterns Syntaxin / epimorphin family signature. 209 248 IPR006012 GO:0005484|GO:0006886|GO:0016020
Seca11g05106 305 Pfam SNARE domain 240 291 IPR000727 -
Seca11g05106 305 Gene3D - 194 295 - -
Seca11g05106 305 SUPERFAMILY t-snare proteins 32 258 IPR010989 GO:0016020|GO:0016192
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Seca11g05106 Seca-Chr11 145870981 145871898 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g05106 1 304 SNARE and Associated Proteins AT1G61290 79.276 0.0 506
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g05106 K08486 - gmx:100805869 518.464