Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g05103 ATGGATAAGTGTGATTTTGAATCAACCATTCACTTGGATGAAGATAAAGATCCGGTGTTTGACTGTAGTTCTGATGATAGTCTTAGTAGTGGAGAGTATATTAAGTTGTGCGAGAAAAATGAAAAGCAAGAGACTGATATAGGTGATGGTGAATGTAAAAGGATGTTTGAGTTGTCAGTAGATGAAATGTTGTCCAAAGAGTTTGCTAGTGAAGAAGAGGCATATGAATTTTATAAGTTGTATGCAAGACATCATGGTTTTGTGGTTAGGAAAGATGATGTAACCAAGGATCTTAGGGGTAATCATATAATGCGGCAATTTGTTTGCAATGGGGAGGGTTTAAGGAACAAGAAGCACTTTATGAGGGGGGATAGGAAGAAAGAACACAGGCCATTGACTCGTACAAATTGCCTTGCTAGGCTTCGTGTACACTACCATCACAAGAGTTTAAAGTGA 456 0.3816 MDKCDFESTIHLDEDKDPVFDCSSDDSLSSGEYIKLCEKNEKQETDIGDGECKRMFELSVDEMLSKEFASEEEAYEFYKLYARHHGFVVRKDDVTKDLRGNHIMRQFVCNGEGLRNKKHFMRGDRKKEHRPLTRTNCLARLRVHYHHKSLK. 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g05103 151 Pfam FAR1 DNA-binding domain 76 148 IPR004330 -
Seca11g05103 151 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 12 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g05103 Seca-Chr11 145825259 145825714 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca11g05103 FAR1 2.4e-13 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g05103 - K17604 ccaj:109792835 139.813