Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g05083 ATGGCTCCTTCCCCGGAAAAATCACCTTGGGAAGTGGCATATAGTCCCTCTACTACCAGGAAAGCACCAACGACTGCAATTGCTAGGAGGCCTTTCAAAGCTAAGAGCATAGTTTGGATTGCTGGTGCAGGGATTTTAATATTTATTGCATTAGGAGGTTGTCTTCTAATGTTGTGGTGCTTTAAGAAAAGACCAGAGAACAAAAATTATAAGCAGAACGTGGGTGCGTATACAAGAACTTTGCATAAACATACATGCAATAACTCGTTTTTCAAAACAACTAATGACGAGGAGAAAGGTGATGGTTCCAAACTTCCACCCCTGCAGCCAGCACCACCACATCCTCTCCCAGTCATTCCTGGAGAAAAGTTCATCAATCCAACTATATCTACCAAAGTAACTGAAAGACAACATATAACAAGTTCCATTAAAGTTTATACTGTTGCATCACTACAGCAGTACACAAATAGTTTTTCGCAAGAAAACTATATTGGGGAAGGCACATTTGGCTCTGTTTATAGGGCTGAGCTCCCTGATGGAAAGCTACTGGCAGTTAGGAAGCTAAATGCTACTGCTTCCATGGGGCAAAATCATGAACAGTTTCTTCAATTAGTGTCCAGTATCTCCAAAATTCAACATGGTAATATAGTAAGACTTATAGGCTACTGCGCTGAGTATAGCCAACGACTACTTGTATATGAGTTTTGCAGTAATGGGACTCTACATGATGCATTGCATGCGGGTGATGAACTTCAGACTAAACTTTCATGGAATGAACGCATTCGGATGTCACTTGAGGCTGCAAGAGCTTTAGAGTATCTGCATGAGCACTTTCAGCCACCTATTGTGCACCAAAACTTTAGGTCTGTTAATGTTCTCCTGAATGACAAGTTGGAAGTGTGTGTCTCTGATTGTGGATTAGGTTCTTTACTATCTACAGGTTCTGCTGGCCAGTTGTTAGGACACCTCACAGCTAATGGTTACAATGCTCCAGAATTTGAGTCTGGGAGTTATACACAGCAGAGTGATGTATTTAGTTTTGGAGTTGTAATGCTAGAACTCCTCACTGGACGAAAATCCTATGACAGCTCACGGCCTCGTGGAGAGCAATTTTTGGTCAGATGGGCAGTCCCTCAACTCCATGACATTGATGCATTGTCAAAAATGGTTGACCCCTCCTTAAATGGAGTGTATCCTATGAAATCCTTGTCACGTTTTGCAGACATTATTTCTTCATGTATACAGCATGAACCTGAATTCCGGCCAGCAATGTCAGAAGTTGTTCAAGATCTCTTGCGAATGATGTAG 1308 0.4182 MAPSPEKSPWEVAYSPSTTRKAPTTAIARRPFKAKSIVWIAGAGILIFIALGGCLLMLWCFKKRPENKNYKQNVGAYTRTLHKHTCNNSFFKTTNDEEKGDGSKLPPLQPAPPHPLPVIPGEKFINPTISTKVTERQHITSSIKVYTVASLQQYTNSFSQENYIGEGTFGSVYRAELPDGKLLAVRKLNATASMGQNHEQFLQLVSSISKIQHGNIVRLIGYCAEYSQRLLVYEFCSNGTLHDALHAGDELQTKLSWNERIRMSLEAARALEYLHEHFQPPIVHQNFRSVNVLLNDKLEVCVSDCGLGSLLSTGSAGQLLGHLTANGYNAPEFESGSYTQQSDVFSFGVVMLELLTGRKSYDSSRPRGEQFLVRWAVPQLHDIDALSKMVDPSLNGVYPMKSLSRFADIISSCIQHEPEFRPAMSEVVQDLLRMM. 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g05083 435 ProSitePatterns Protein kinases ATP-binding region signature. 164 187 IPR017441 GO:0005524
Seca11g05083 435 Gene3D Phosphorylase Kinase; domain 1 122 235 - -
Seca11g05083 435 SUPERFAMILY Protein kinase-like (PK-like) 137 431 IPR011009 -
Seca11g05083 435 ProSiteProfiles Protein kinase domain profile. 158 435 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g05083 435 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 236 435 - -
Seca11g05083 435 Pfam Protein tyrosine and serine/threonine kinase 161 431 IPR001245 GO:0004672|GO:0006468
Seca11g05083 435 PANTHER OS01G0253100 PROTEIN 96 432 - -
Seca11g05083 435 Gene3D Transferase(Phosphotransferase) domain 1 236 434 - -
Seca11g05083 435 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 125 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g05083 Seca-Chr11 144911725 144918453 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g05083 116 435 Strubbelig Receptor Gene Family AT4G03390 65.109 1.44e-145 432
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Seca11g05083 PK_Tyr_Ser-Thr 1.4e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g05083 - - gmx:100802955 655.981