Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g05072 ATGCATAACATGAAGGCTGAAAATGTGGAGTTCTGTGCTGATATGACTTGTATGAGTAGTGGCATGCACTCAAGCACTACTGATGAGACATCATTTCAAGATAGTCAAATTGAGTTTGCAGATAGTAGTTATCCATCATTTTTTTCTGGTAATGTTATCTTTGATAACAAGACATCAGTGCCACTTCCAACTGATGGTGAAAGAGATGAATTGAGTACATCTTACCAAAATAATTTTGACAATGATGTTGCTGAGTTCAATGGAGGCCAAGAGATGAAACAATTAACTGGTGTTTTGCCTTCTATGGGGTGTCAAAATTATGAAAGTTTTATGAATGAGGATAATTATGCAGTTAAAACATCTGAGATATCCAATCAATATCAATACATCTTTGATGGAACTACTAGCAATTTTCAAGGAAACATGTACAGTTTGAATTTGGAAGCTGTAGATAAATCTTTGCCCCATTCCCAAGCACAAATCGTCATCGAGAAGCAGTTTGGTTGTGTTAAGAGTGGAGGGGGAATGATTCAACATAAAGATACTGATTTTCATCTTTCAAGTGGAAATGCTGAGAGTTTTCATGTTGAGGACGACTCTGATGTTTGCATTATCGAAGGAATCAGTCACTCTTCGCTTACAACTCAATCTGCAGACATTGGAAATTCCCTTAATATATCTCAATCTTCTAGATATGATGATTCCCAGCCCTACATGGTTGGGAGCACAAGGCCAAAGGCATGTGATGAGAGAAATATATTACGAGTTGCTTTGCAGGATCTGTCTCAGCCAAAGTCAGAAGTTAGCCCACCAGATGGATTGTTGGCAGTTCCACTTTTAAGACATCAGAGAATTGCTTTATCATGGATGGTTCAGAAGGAAACATCAAGTTTATATTGCTCAGGAGGAATTCTTGCAGATGATCAGGGTCTTGGAAAAACAGTTTCAACTATTGCATTAATATTAAAGGAAAGACCTTCAATACTTAGTGCATGCTCTAATGCCCAAAAATGTGAATTAGAAACTTTGAATCTGGATGTGGAGGATGACATGCTTCCTCAGAATGGTGCCGTGAAGAAAGAATCTAATATTTGTGAGGATATGTCGAGTAGATATCCAATCAAGAGCATGAATTTTTCAGAGCAAGCAAAGGGAAGGCCATCTGCTGGGACCCTTATTGTTTGTCCCACTAGTGTCCTGCGCCAATGGGCTGAGGAGTTGCATAATAAAGTAACTAGCCAAGCAAATCTCTCTGTGCTAGTGTACCATGGAAGTAATCGAACAAAAGATCCTTATGAGGTGGCTAAGTATGATGTTGTCCTGACAACTTATTCCATTGTCAGCATGGAGGTCCCTAAGCAGCCTCTAGTTGACAAAGATGATGAAGAAAAGGGAATTTGTGATGATCATTCTGTACCAAGCAGGAAAAGGAAAAACCCTTCTAATTCTAATAGAAGTGCCAAGAAGGGATTGGACAGCACAATTCAGGCCGTTGCTCGACCTCTTGCAAAGGTGGCATGGTTTAGGGTTGTCTTGGATGAGGCCCAGAGTATAAAGAATCACAAAACTCAAGTTGCAAGGGCATGTTGGGGTCTTCGTGCTAAGCGCAGATGGTGTTTGTCAGGGACTCCTATCCAGAATTCAATCGATGATCTCTACAGTTACTTCAGATTTCTAAGATATGACCCTTATGCTGTCTATACATCATTTTGTTCTACAATTAAGATCCCAATCAACCGAAATCCAACAAAAGGGTATAGAAAGCTACAAGCTGTCTTAAAGACTATTATGTTACGTCGGACCAAAGGCACACTTCTTGATGGGGAGCCTATTATTTCCTTGCCACCTAAACTTGTAGAGTTGAAAAAGGTTGACTTTTCAATGGAAGAGCGTGGTTTCTATTCCAGACTAGAGGCTGATTCACGTGCACAGTTTCAGGCATATGCTGATGCTGGAACTGTCAAGGAAAATTATGTTAACATTTTGCTGATGCTTTTACGCCTTAGACAAGCTTGTGATCACCCTCTGCTTGTAAAACGTTACAATTCTAGCTCTTTATGGAAAGCTTCAGTTGAGATTGCAAAGAAGCTTCCTCAGGAAAAACAAATCTCTCTTCTGAAATGTTTAGAGGCTTCCTTGGCTCTCTGTGGCATTTGTAATGATCCTCCTGAAGATGCTGTTGTTGCAGTTTGTGGTCATGTATTCTGTAACCAGTGCATTTGTGAACATCTTAACGGCGATGACAAGCAGTGCCCTGCTACAAAATGCAAAAGTCAACTGAGCACATCTTCAGTGTTTTCCAAAGCCACACTGAACAGTTGTCTTCCAAACCAGGGTTGTGATAATTTACCTGGTTACTCTGTTTCTGAAGTTGAAGAATTTGAGCCTTGGTGTCAGAGTAAGCCATATGATTCTTCAAAAATTAAGGCGGCACTTGAGGTGTTGAAGTCATTGAGTAAGCCACAGTGCTATACATCAAAAAGTATTTCTGTGCATAGCACAATTGCAGAAAATAATGACTGCCCTGGGATCTCCTCTGATGCTAACAATGGGAAATTCTTAAAGGATTCTCCTGATAGTCAAATTTTGTCTGCGAATGGAAGCTCTAATGATTCAGTTACTGTTGTAGGGGAGAAAGCGATTGTGTTTTCTCAGTGGACGAGGATGCTAGATTTACTTGAAGCGTGTCTCAAGAATTCTTCAATTCAGTACAGAAGGCTTGATGGAACAATGTCGGTTGTTGCAAGAGATAAAGCTGTTAAAGATTTTAACACACTTCCTGAGGTATCAGTTATGATTATGTCTTTGAAGGCTGCCAGTCTTGGTCTAAACATGGTGGCAGCCTGCCATGTTCTTATGCTAGATTTATGGTGGAATCCTACAACTGAAGACCAAGCAATAGATAGAGCACATCGAATTGGGCAGACTCGTCCTGTGACTGTTTTGCGGTTAACTGTGAGAGATACAGTTGAAGATCGTATTCTAGCACTGCAGCAAAAGAAGCGAAAGATGGTTGCATCTGCATTCGGGGAGGATGGAACTGGTGGTCGTCAAAGTCGCCTTACAGTGGATGATTTAAAATATTTGTTCATGATGTGA 3099 0.403 MHNMKAENVEFCADMTCMSSGMHSSTTDETSFQDSQIEFADSSYPSFFSGNVIFDNKTSVPLPTDGERDELSTSYQNNFDNDVAEFNGGQEMKQLTGVLPSMGCQNYESFMNEDNYAVKTSEISNQYQYIFDGTTSNFQGNMYSLNLEAVDKSLPHSQAQIVIEKQFGCVKSGGGMIQHKDTDFHLSSGNAESFHVEDDSDVCIIEGISHSSLTTQSADIGNSLNISQSSRYDDSQPYMVGSTRPKACDERNILRVALQDLSQPKSEVSPPDGLLAVPLLRHQRIALSWMVQKETSSLYCSGGILADDQGLGKTVSTIALILKERPSILSACSNAQKCELETLNLDVEDDMLPQNGAVKKESNICEDMSSRYPIKSMNFSEQAKGRPSAGTLIVCPTSVLRQWAEELHNKVTSQANLSVLVYHGSNRTKDPYEVAKYDVVLTTYSIVSMEVPKQPLVDKDDEEKGICDDHSVPSRKRKNPSNSNRSAKKGLDSTIQAVARPLAKVAWFRVVLDEAQSIKNHKTQVARACWGLRAKRRWCLSGTPIQNSIDDLYSYFRFLRYDPYAVYTSFCSTIKIPINRNPTKGYRKLQAVLKTIMLRRTKGTLLDGEPIISLPPKLVELKKVDFSMEERGFYSRLEADSRAQFQAYADAGTVKENYVNILLMLLRLRQACDHPLLVKRYNSSSLWKASVEIAKKLPQEKQISLLKCLEASLALCGICNDPPEDAVVAVCGHVFCNQCICEHLNGDDKQCPATKCKSQLSTSSVFSKATLNSCLPNQGCDNLPGYSVSEVEEFEPWCQSKPYDSSKIKAALEVLKSLSKPQCYTSKSISVHSTIAENNDCPGISSDANNGKFLKDSPDSQILSANGSSNDSVTVVGEKAIVFSQWTRMLDLLEACLKNSSIQYRRLDGTMSVVARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVRDTVEDRILALQQKKRKMVASAFGEDGTGGRQSRLTVDDLKYLFMM. 1033
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g05072 1032 CDD DEXDc_SHPRH-like 279 600 - -
Seca11g05072 1032 Gene3D - 247 340 IPR038718 -
Seca11g05072 1032 MobiDBLite consensus disorder prediction 458 476 - -
Seca11g05072 1032 SMART ring_2 716 754 IPR001841 -
Seca11g05072 1032 Gene3D - 615 1031 IPR027417 -
Seca11g05072 1032 MobiDBLite consensus disorder prediction 458 490 - -
Seca11g05072 1032 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 868 1027 IPR001650 -
Seca11g05072 1032 ProSitePatterns Zinc finger RING-type signature. 731 740 IPR017907 -
Seca11g05072 1032 ProSiteProfiles Zinc finger RING-type profile. 716 755 IPR001841 -
Seca11g05072 1032 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 709 767 IPR013083 -
Seca11g05072 1032 CDD SF2_C_SNF 877 984 - -
Seca11g05072 1032 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 294 562 IPR014001 -
Seca11g05072 1032 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 608 1031 IPR027417 -
Seca11g05072 1032 Gene3D - 492 601 IPR038718 -
Seca11g05072 1032 Gene3D - 372 491 IPR038718 -
Seca11g05072 1032 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 158 1031 - -
Seca11g05072 1032 SMART ultradead3 275 577 IPR014001 -
Seca11g05072 1032 SUPERFAMILY RING/U-box 713 760 - -
Seca11g05072 1032 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 374 460 - -
Seca11g05072 1032 Pfam Helicase conserved C-terminal domain 875 974 IPR001650 -
Seca11g05072 1032 Pfam Zinc finger, C3HC4 type (RING finger) 716 752 IPR018957 GO:0046872
Seca11g05072 1032 Pfam SNF2-related domain 299 677 IPR000330 GO:0005524|GO:0140658
Seca11g05072 1032 SMART helicmild6 891 974 IPR001650 -
Seca11g05072 1032 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 483 612 - -
Seca11g05072 1032 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 263 600 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g05072 Seca-Chr11 144597558 144603100 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g05072 202 1031 RAD5 or RAD16-like Gene Family AT1G61140 60.926 0.0 971
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca11g05072 SNF2_N 3.1e-69 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g05072 - - gmx:100802436 1560.43