Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g05070 ATGAGCCTCCACAATATGGATAACATTGTGTTAAAGTTTAGGACTTTATGCACCTTGGTTCTTTTACTTTTTCTATCTTTTGAGCCTTGTGTTTCTTCTAGACATAGCCAATTTTGGAGTGGTGAGAGGAAATTGATGAGCTCTGGAGATAATGGTGATGATCATCTTGTGACTAATTTGCCTGGCCAGCCTCAGGTAGATTTCCAGCACTATGCTGGGTTTGTCACAGTCAATGAAACCAATGGAAGGGCACTCTTTTACTGGTTCTATGAGGCTATGACCAAGCCAGAAGAGAAGCCATTGGTGCTGTGGCTTAATGGAGGTCCTGGGTGCTCTTCTGTGGGATATGGGGCAACACAAGAGATTGGCCCATTTTTAGTGGATACTGATGGCCAAGGCCTTAAATTTAATAACTTCTCATGGAACAGAGAAGCCAACATGTTATTCCTGGAATCTCCTGTTGGAGTTGGCTTTTCCTACTCAAATACAACCAGTGACTATGAACAATTAGGAGATGACTTCACAGCTAATGATGCTTACTCTTTTCTGCACAATTGGTTCCTCAAGTTTCCATCATATAGAACAAGGACATTTTACATAGCAGGGGAGAGCTATGCAGGAAAGTATGTACCAGAGCTGGCTGAACTCATCCTTGATAACAACAAGGACCCATCCCTTCATATTGATCTCGAGGGTATTTTGTATATTCTTTTGCAGCTTGGTAACCCTGAAACATCTGATGCTGAGGATTGGATAGGACTGGTTGATTATGCTTGGAGCCATGCAGTGATATCTGATGAAACTCACAAAATAATCAAAACAAGTTGTGACTTTAATAGTAGTGATCCATGGCGTAATGAAGATTGTAGTCAAGCTGTGGATGAAGTACTTAAACAGTATAATGAAATTGATATCTATAGCCTTTACACCTCTGTTTGCTTTGCCTCTACAGCACGTTCAAATGGTCAATCAATGCAAACTTCAATGAAGCGTTCATCTACAATGGTTAGTGAAGAACATATGCCTAGGATGATGGGTGGTTATGATCCATGTCTTGATGACTATGCTATAGCTTTTTATAATAGACCAGATGTTCAGAAGGCCCTTCATGCCAGTGATGGTCACAATCTAAAGAATTGGAGTATTTGCAACAACAAGATATTCAATGACTGGGCAGATTCAAAGCCATCTGTTATCCCAATCTACAGGAAGCTTATTTCAGCAGGACTTAGAATTTGGGTTTACAGTGGAGACACAGATGGTAGAGTGCCAGTGCTGTCCACAAGGTACAGCTTAAGTTCTCTAGCTTTGCCTGTCACTAAGCCATGGAGGCCTTGGTACCATGAAAATGAGGTTAGCGGGTGGTATGAAGAATATGAGGGGCTAACATTTGCAACATTTAGAGGAGCTGGCCATGCAGTTCCCTGTTTCAAACCAAGCAACTCACTTGCATTCTTCTCATCCTTCCTCCTTGGAGAATCACCACCTTCTACAAAATAA 1500 0.4147 MSLHNMDNIVLKFRTLCTLVLLLFLSFEPCVSSRHSQFWSGERKLMSSGDNGDDHLVTNLPGQPQVDFQHYAGFVTVNETNGRALFYWFYEAMTKPEEKPLVLWLNGGPGCSSVGYGATQEIGPFLVDTDGQGLKFNNFSWNREANMLFLESPVGVGFSYSNTTSDYEQLGDDFTANDAYSFLHNWFLKFPSYRTRTFYIAGESYAGKYVPELAELILDNNKDPSLHIDLEGILYILLQLGNPETSDAEDWIGLVDYAWSHAVISDETHKIIKTSCDFNSSDPWRNEDCSQAVDEVLKQYNEIDIYSLYTSVCFASTARSNGQSMQTSMKRSSTMVSEEHMPRMMGGYDPCLDDYAIAFYNRPDVQKALHASDGHNLKNWSICNNKIFNDWADSKPSVIPIYRKLISAGLRIWVYSGDTDGRVPVLSTRYSLSSLALPVTKPWRPWYHENEVSGWYEEYEGLTFATFRGAGHAVPCFKPSNSLAFFSSFLLGESPPSTK. 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g05070 499 Pfam Serine carboxypeptidase 61 490 IPR001563 GO:0004185|GO:0006508
Seca11g05070 499 SUPERFAMILY alpha/beta-Hydrolases 53 493 IPR029058 -
Seca11g05070 499 Gene3D alpha/beta hydrolase 52 315 IPR029058 -
Seca11g05070 499 Gene3D - 351 387 - -
Seca11g05070 499 FunFam Carboxypeptidase 349 494 - -
Seca11g05070 499 PRINTS Carboxypeptidase C serine protease (S10) family signature 137 149 IPR001563 GO:0004185|GO:0006508
Seca11g05070 499 PRINTS Carboxypeptidase C serine protease (S10) family signature 462 475 IPR001563 GO:0004185|GO:0006508
Seca11g05070 499 PRINTS Carboxypeptidase C serine protease (S10) family signature 150 160 IPR001563 GO:0004185|GO:0006508
Seca11g05070 499 PRINTS Carboxypeptidase C serine protease (S10) family signature 186 211 IPR001563 GO:0004185|GO:0006508
Seca11g05070 499 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 56 479 IPR001563 GO:0004185|GO:0006508
Seca11g05070 499 FunFam Carboxypeptidase 51 315 - -
Seca11g05070 499 Gene3D - 398 492 - -
Seca11g05070 499 FunFam Carboxypeptidase 398 492 - -
Seca11g05070 499 ProSitePatterns Serine carboxypeptidases, serine active site. 200 207 IPR018202 GO:0004185
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g05070 Seca-Chr11 144535334 144539605 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g05070 361 493 Calmodulin-binding Proteins AT2G22960 34.328 4.01e-16 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g05070 K16297 - gmx:100793427 868.611