Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g05069 ATGGACAACAAAAATTCATCATCAGGCTCTCAACATCTTCAGCTTCCACCAGGGTTTCGTTTCCATCCTACTGATGAGGAACTCGTCATTCACTATCTCAAGAAAAAAGTTGCATCTACACCTCTTCCAGTTGACATCATAGCTGAGGTTAATCTCTACAAGTTTGACCCCTGGGAACTCCCAAGTAAAGCAACGTTTGGTGAGCATGAGTGGTATTTTTTTAGCCCAAGGGATAGGAAATACCCAAATGGGGCGAGACCAAATAGAGCTTCTACTTCTGGGTATTGGAAAGCTACTGGAATTGACAAGCCTATACTAACATCTGATGGGAACCAGAAAGTTGGTGTTAAGAAAGCTCTTGTTTTTTATGGTGGAAAGCCTCCAAAAGGGGTTAAAACCAATTGGATTATGCATGAGTATAGGCTTATTGATAATAATTCCTTTAACTCTAGCTCAAAAACTACTCCTCTGCCTCTTGATCCGCCAAATAGCAACAAGAAGAATCCCCTGAGGCTTGATGATTGGGTTTTGTGCCGAATATACAAGAAAAGCGACAGAGCCACACTGCCTAGGCTACCCCTAATGGAGCATGATAAACATCTTTCAAAGGAGACCATGATACCAATGTCAACTTTGTCAATGGATAATCCGAACCAGAACTCTAAACCTCCATCTTCTAGAAGCACAAGTTATGGACTAGTTGGACTTGAAAATGATGACAACTTCTTGGATGGAATCTTAGCATCAACTGATCAGAGCATGCAAAATGGTTCTGATGATAATAACTTCCCCATGAAACGTGGAATAACATCACAATTTTGGAATGAGACAGGGTCTCCAGGGTCATCTTCTTCAAGCAAGCGATTCCATGGTGATCTTAATAGTGGAAGTAGCACCGTTGAGGAAAACAATAATTCCTTTGTTTCCCTACTTAGCCAGATTCCTCAGAGTGTAACTTTTCATCCAAATTCGGTTCTTGGTTCTGTTGGGGATGGTGTAATGAGGCAACAATTTCAGCTTCCAAGCATAAATTGGAACTAA 1041 0.4111 MDNKNSSSGSQHLQLPPGFRFHPTDEELVIHYLKKKVASTPLPVDIIAEVNLYKFDPWELPSKATFGEHEWYFFSPRDRKYPNGARPNRASTSGYWKATGIDKPILTSDGNQKVGVKKALVFYGGKPPKGVKTNWIMHEYRLIDNNSFNSSSKTTPLPLDPPNSNKKNPLRLDDWVLCRIYKKSDRATLPRLPLMEHDKHLSKETMIPMSTLSMDNPNQNSKPPSSRSTSYGLVGLENDDNFLDGILASTDQSMQNGSDDNNFPMKRGITSQFWNETGSPGSSSSSKRFHGDLNSGSSTVEENNNSFVSLLSQIPQSVTFHPNSVLGSVGDGVMRQQFQLPSINWN. 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g05069 346 FunFam NAC transcription factor 56 24 188 - -
Seca11g05069 346 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 12 256 - -
Seca11g05069 346 MobiDBLite consensus disorder prediction 274 300 - -
Seca11g05069 346 Pfam No apical meristem (NAM) protein 16 142 IPR003441 GO:0003677|GO:0006355
Seca11g05069 346 Gene3D NAC domain 24 187 IPR036093 GO:0003677|GO:0006355
Seca11g05069 346 MobiDBLite consensus disorder prediction 210 233 - -
Seca11g05069 346 SUPERFAMILY NAC domain 9 183 IPR036093 GO:0003677|GO:0006355
Seca11g05069 346 ProSiteProfiles NAC domain profile. 15 183 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g05069 Seca-Chr11 144530723 144532710 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g05069 5 346 NAC Transcription Factor Family AT1G61110 53.501 4.43e-110 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca11g05069 NAM 2e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g05069 - - gmx:100797132 503.442