Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g05055 ATGGGTTTGAGTTCTAAGCAGGTTTCTAGCAGTGGACTTGATTGGAAACAGACCTTATTGGAAGCTCAAAACTTGGAACTCCCAAAGCCTCAAATGATGAAGAAACAACAACAACAGCAACAACAAACTCAGCAAACAGAGTCTTTGAAGTGTCCAAGATGTGATTCTTCAAACACCAAATTTTGTTACTACAACAACTACAACAAGTCTCAACCTCGCCATTTCTGCAGAGCTTGTAAGAGGCACTGGACTAAAGGTGGAACTTTACGCAATGTTCCTGTTGGTGGTGGAAGGAAGAACAAAAGGGTCAAAAAATCAAACACCCCAACCTCTCCTTCCACTACCATAGCCACAACCTCTACTTGCACCAACTCTGTAACTGTAACCCCTTCAATTGGTAATATGGATGAAACTCCTTTTGTTGCTGGTGATCAAAAGAGCATGTCTTCTTCTCTCTATCAATCTCTGATTCGTCCACCATCTCTGCTTCTACAACAGAATTTGATGAATACTAGAGGCTTAGAAAGCAAAGATTTTGGTATTGGTATTGGTATTGGTAATGGTAATGGCATGTTTCTGAATTCATCTTTGACTCTTCCTCAAAACCAGAGCCTACTCTTCCCTTTCTCAACTTCAAGCTCTTTTGACACAAACCCTTGTTCATCTTCCAATGTTTATAACTATGGGGAGGAGTTTAGAACAATGGAGGAACCAACCATCAACAGTATAATGCCCACCACTGGCTGCAATAACACACAGCCATGGGAGATACCAGCAACAAGTGGTGCCATGGGAACTTCAAATTATTGGAATTGGGAGGATATTGATTCTTTGGTCTCAACTGATCTGAAAGATCCTTGGGATGATTCTGATATCAAACCATGA 885 0.4102 MGLSSKQVSSSGLDWKQTLLEAQNLELPKPQMMKKQQQQQQQTQQTESLKCPRCDSSNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGGRKNKRVKKSNTPTSPSTTIATTSTCTNSVTVTPSIGNMDETPFVAGDQKSMSSSLYQSLIRPPSLLLQQNLMNTRGLESKDFGIGIGIGNGNGMFLNSSLTLPQNQSLLFPFSTSSSFDTNPCSSSNVYNYGEEFRTMEEPTINSIMPTTGCNNTQPWEIPATSGAMGTSNYWNWEDIDSLVSTDLKDPWDDSDIKP. 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g05055 294 MobiDBLite consensus disorder prediction 30 51 - -
Seca11g05055 294 Pfam Dof domain, zinc finger 48 101 IPR003851 GO:0003677|GO:0006355
Seca11g05055 294 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 33 198 IPR045174 GO:0003700|GO:0006355
Seca11g05055 294 ProSiteProfiles Zinc finger Dof-type profile. 49 103 IPR003851 GO:0003677|GO:0006355
Seca11g05055 294 MobiDBLite consensus disorder prediction 92 117 - -
Seca11g05055 294 ProSitePatterns Zinc finger Dof-type signature. 51 87 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g05055 Seca-Chr11 144297158 144298069 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g05055 32 111 C2C2-Dof Transcription Factor Family AT1G51700 60.000 1.73e-31 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Seca11g05055 zf-Dof 1.7e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g05055 - - gmx:100818111 363.229