Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g05035 ATGAATTGGACTAAACATGATGCTGATATTTTGCTTCAAGAGGGTTGGAAAGAATTTGCTACACATTACTCCCTTGATTACGGACATATGGTGTTGTTTGAATACAAAGATACTTCTAATTTTGGGGTGCACATATTTGACAAGAGTATACCCTTGAAATACAATATCCTTTCCATGCCAATCAAGATGAACAGAACAACATTGACCAGATTAGTGATGACTCAGTTGAAATTTTGGATAATCTACCTCCATCTACATGCTAATAAATTCACTGCTCTCTCTGTTTTTTTCCTCTCTGCGACGCAATTGAAGGACTCAGCTTCATATGCACGAGAAACAGGCATGTGCTGTTGA 354 0.3757 MNWTKHDADILLQEGWKEFATHYSLDYGHMVLFEYKDTSNFGVHIFDKSIPLKYNILSMPIKMNRTTLTRLVMTQLKFWIIYLHLHANKFTALSVFFLSATQLKDSASYARETGMCC. 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g05035 117 ProSiteProfiles B3 DNA-binding domain profile. 1 49 IPR003340 GO:0003677
Seca11g05035 117 PANTHER B3 DOMAIN-CONTAINING 2 49 - -
Seca11g05035 117 SUPERFAMILY DNA-binding pseudobarrel domain 3 49 IPR015300 -
Seca11g05035 117 Gene3D - 1 50 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g05035 Seca-Chr11 143599243 143599596 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g05035 5 49 B3 DNA Binding Superfamily AT3G18990 42.222 7.43e-08 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g05035 - - lja:Lj0g3v0187709.1 81.2629