Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g05011 ATGGCCGAACGCGGCGGAGACCGTGGTGGATTTGGCCGTGGCTTCGGCGGTCGCGGACGCGGCGACAGGGGCCGTGGTCGCCGCAGGGCTTCTGGAAGGCGCGATGAAGAGGAGAAGTGGGTTCCAGTGACGAAGCTGGGTCGTCTCGTGAAAGAGGGTAAGATCCGAAGCCTTGAGCAGATCTACCTTCACTCACTCCCAATCAAGGAGCACCAAATCGTGGACACCTTGGTTGGTCCCTCCCTCAAGGATGAGGTCATGAAAATCATGCCTGTTCAGAAGCAGACCCGTGCCGGTCAGCGAACACGGTTCAAGGCCTTCGTTGTTGTTGGTGACGGCAACGGCCACGTTGGTCTCGGTGTCAAGTGCAGCAAGGAAGTTGCCACCGCCATTCGCGGTGCCATCATCTTGGCTAAGCTCTCCGTCATTCCCGTGAGGAGAGGTTACTGGGGTAACAAGATTGGAAAGCCCCACACTGTTCCCTGCAAGGTCACCGGAAAGTGTGGTTCAGTCACTGTCCGCATGGTCCCCGCCCCTCGTGGTTCTGGAATTGTTGCTGCTAGGGTTCCTAAGAAGGTCTTGCAATTTGCAGGAATTGAGGATGTCTTCACCTCCTCCAGAGGATCCACTAAGACTCTTGGAAATTTCGTCAAGGCTACTTTTGATTGTCTGCTGAAAACCTACGGGTTTCTAACGCCCGAATTCTGGAGGGAGACTCGTTTCTCCAAATCTCCATTCCAAGAGTACACTGATCTATTGGCTAAGCCAACAGGAAAGGCCTTGATCCTTGAGGAGGAGAGGGTGGATGCTTGA 813 0.5486 MAERGGDRGGFGRGFGGRGRGDRGRGRRRASGRRDEEEKWVPVTKLGRLVKEGKIRSLEQIYLHSLPIKEHQIVDTLVGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFWRETRFSKSPFQEYTDLLAKPTGKALILEEERVDA. 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g05011 270 PANTHER RIBOSOMAL S SUBUNIT 33 228 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Seca11g05011 270 MobiDBLite consensus disorder prediction 1 37 - -
Seca11g05011 270 FunFam 40S ribosomal protein S2 39 144 - -
Seca11g05011 270 ProSitePatterns Ribosomal protein S5 signature. 99 131 IPR018192 -
Seca11g05011 270 ProSiteProfiles S5 double stranded RNA-binding domain profile. 82 145 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Seca11g05011 270 Pfam Ribosomal protein S5, C-terminal domain 166 238 IPR005324 GO:0003735|GO:0005840|GO:0006412
Seca11g05011 270 FunFam 40S ribosomal protein S2 145 238 - -
Seca11g05011 270 NCBIfam 30S ribosomal protein S5 35 242 IPR005711 GO:0003735|GO:0006412|GO:0015935
Seca11g05011 270 Pfam Ribosomal protein S5, N-terminal domain 82 146 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Seca11g05011 270 Gene3D - 145 237 IPR014721 -
Seca11g05011 270 SUPERFAMILY dsRNA-binding domain-like 78 147 - -
Seca11g05011 270 SUPERFAMILY Ribosomal protein S5 domain 2-like 158 238 IPR020568 -
Seca11g05011 270 Gene3D - 39 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g05011 Seca-Chr11 142959389 142960903 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g05011 36 258 Cytoplasmic Ribosomal Protein Gene Family AT3G57490 91.031 3.32e-152 424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g05011 K02981 - gmx:100797105 478.018