Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g04993 ATGGCTGAAAATGTGTTGGAGCTCAACCTTGGTTTAGGGAACTTTTCTGGTCATTCAGGACAGTCCCCTAGGCCAAGGTGCCCTGCACCATTTCTGTTAAAGACCTATGATTTGTTGGAAGAAGGTGAGGTGGATGGTGCAGCTGAAGATGGTACCAAAATTGTGTCATGGAATGCAGAAGGAACTGGTTTTGTTGTGTGGTCTCCAGCTGAATTCTCAGAACTCACCTTGCCTAGATATTTCAAGCACAACAATTTCTCTAGCTTCATTCGCCAATTGAATACATATGGATTTAAGAAAACGTCATCTAAAAGATGGGAATTCAAGCATGAGAAATTTTTGAGAGGTTGCAGGCATATGCTAGTTGAAATAACGAGGAAAAAGTGCGAGCCAAGTGTGTTTCCTACATATCTCAAGCCTTCTTCAGAGGAAAATGCAATGACTAATTCAATGGAAGAAAACAATCATCAACTACTTATGGAGGAGAACAAGAACCTAAAGAAGGAGAGATTGGAGCTTCAAATGCAGATAGCTGAATGCAAAGCAATGGAAATGAAGTTGTTGGAGTGTCTCTCTCAATTTATGGACAACCACCAAAATAAAGTTAGGAGACAATGTTAA 621 0.4026 MAENVLELNLGLGNFSGHSGQSPRPRCPAPFLLKTYDLLEEGEVDGAAEDGTKIVSWNAEGTGFVVWSPAEFSELTLPRYFKHNNFSSFIRQLNTYGFKKTSSKRWEFKHEKFLRGCRHMLVEITRKKCEPSVFPTYLKPSSEENAMTNSMEENNHQLLMEENKNLKKERLELQMQIAECKAMEMKLLECLSQFMDNHQNKVRRQC. 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g04993 206 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 22 183 IPR027725 -
Seca11g04993 206 SUPERFAMILY "Winged helix" DNA-binding domain 28 127 IPR036390 -
Seca11g04993 206 FunFam Heat stress transcription factor A-6b 24 128 - -
Seca11g04993 206 Gene3D - 25 128 IPR036388 -
Seca11g04993 206 Coils Coil 149 188 - -
Seca11g04993 206 SMART hsfneu3 27 127 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca11g04993 206 Pfam HSF-type DNA-binding 31 127 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g04993 Seca-Chr11 142669162 142671915 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g04993 19 195 HSF AT5G62020 35.885 1.90e-39 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Seca11g04993 HSF_DNA-bind 1.1e-28 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g04993 K09419 - gmx:100789792 330.487