Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g04992 ATGGCGAGTCTGTTCGGTTCTTCTTCCTCTGGTGCGATATCGTTGAAAGTGACCAACACGCCCTCACAGGAACTCGCTCTCACCAACCTCGCCTTCTGTTCCCCTTCCGATCTTCCCAAATTCGCCGTCCCCGGTTACAACGACTTCTACCTCGCTCAAGTCGCCGATTCCTTCATATTCTCTATCTCATGTCATGCAAGCATACAGAATGGCCATATTGCGTTGAATTCCATTCAACGTCGGTGGGCCAAAGTTTCTACTGGTGAATCCATACCTGTGAGCCGATTCGTGCCGCCTGAGAACTTCAACCTGGCACTGCTAACCCTTGAATTGGACTTCATTAAAAGGGTTGGAAACAGGAGTGAACAGATTGATGCGGTTCTACTGGCTAAGCAAATCCGGAAGAGATTTTTAAATCAGGTAATGACAACAGGGCAGAAAGTGTTATTTGAGCATCATGGAAATAATTATAGCTTTACAGTCAGTCAAGCTGCTGTTGAGGGCCAAGAAAAGTCAAATTCTATTGAAAGAGGGATGATTTCAAATGACACATACATTGTTTTCGAAACATCACGTGATAGTGGAATTAAGTGTTATGGTTTGCAGATTGTCAATCAGCGTGAGGCTGTCACTAGCAACATTTTTAAGCAGAAAGAATTTAACCTTCAGTCTCTGGGTATTGGTGGTCTGAATGCAGAGTTTGCAGATATATTTCGAAGAGCTTTTGCATCTCGTGTTTTCCCTCCCCATGTGACATCTAAATTAGGGATCCAGCATGTGAAGGGCATGTTGCTTTATGGGCCTCCTGGTACTGGAAAGACCCTTATAGCTCGTCAAATTGGAAAAATTTTGAATGGGAAGGAACCAAAGATTGTCAATGGCCCTGAAGTTTTGAGCAAATTTGTTGGTGAAACTGAAAAGAATGTGAGGGACCTTTTTGCTGATGCTGAACAAGACCAGAGGACCAGAGGGGATGAAAGTGAGTTGCATGTTATAATCTTTGATGAAATTGATGCTATTTGTAAGTCAAGAGGTTCAACTCGAGATGGTACCGGAGTTCATGATAGCATTGTGAACCAGCTTCTTACAAAGATAGATGGTGTGGAGTCACTAAATAATGTGTTACTTATTGGAATGACTAACAGAAAGGACATGCTTGATGAAGCTCTCTTGAGACCAGGGAGGTTGGAAGTCCAGGTGGAGATAAGCCTTCCTGATGAAAATGGTCGATTGCAAATTCTTCAAATTCATACTAACAAGATGAAAGAGAATTCTTTTCTAGCTCCTGATGTCAACCTTCAAGAGCTTGCTGCTCGAACAAAAAACTACAGTGGTGCAGAACTTGAAGGCGTTGTGAAAAGTGCTGTTTCATATGCTTTAAATAGACAATTGAGTCTAGAAGATCTTACTAAGCCAGTGGAGGAAGAGAATATTAAGGTCACGATGGATGACTTTTTGAATGCACTCCAAGAAGTTATTCCTGCATTTGGAGCTTCCACTGACGACCTTGAAAGATGCAGAGTCCACGGCATGGTGGACTGTGGTGATCGACATAAGCGCATTGCTCAAAGAGCAATGCTACTTGTGGAGCAAGTTAAAGTGAGTAAAGGAAGCCCACTTGTTACTTGTCTTCTGGAAGGTTCTAGTGGCAGTGGTAAAACCGCACTTGCAGCTACAGTTGGTATTGAGAGTGACTTCCCATATGTCAAGATAGTTTCAGCTGAATCTATTCTTGGTCTACATGAGAGCACTAAATGTGCACAAATTATTAAGGCATACAAGTCACCATTGAGCGTTATTATTCTTGATGACATTGAGAGGTTATTGGAGTATATGGCCATTGGTCCTCGTTTTTCAACCTTGATTTCTCAGACACTACTTGTCCTGCTCAAACGGCTTCCTCCAAAGGGGAAAAAGCTCATGGTTATTGGTACGACAAGTGAACTGGGTTTCTTGGACTCAGTTGGATTTTGTGATACTTTCTCTGTCACTTACCATGTTCCTACCTTGAACACAGATGATGCAAAGAAGGTCCTAAAACAGTTGAATGTTTTTGCTGATGAAGATGTTGATTCTGCAGCAGAGGCCTTGAATGATATGCCTATTAAGAAGCTATACACGTTGATTGAGATGGCAGCACAAGGAGCACAAGGCGGATCTGCAGAAGCTATCTTTTCTGGCAAAGAGAAGATCAATATATCTCATTTCTATGATTGCCTCCAGGATAATTTCTTGTCACATTAA 2244 0.4225 MASLFGSSSSGAISLKVTNTPSQELALTNLAFCSPSDLPKFAVPGYNDFYLAQVADSFIFSISCHASIQNGHIALNSIQRRWAKVSTGESIPVSRFVPPENFNLALLTLELDFIKRVGNRSEQIDAVLLAKQIRKRFLNQVMTTGQKVLFEHHGNNYSFTVSQAAVEGQEKSNSIERGMISNDTYIVFETSRDSGIKCYGLQIVNQREAVTSNIFKQKEFNLQSLGIGGLNAEFADIFRRAFASRVFPPHVTSKLGIQHVKGMLLYGPPGTGKTLIARQIGKILNGKEPKIVNGPEVLSKFVGETEKNVRDLFADAEQDQRTRGDESELHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVVKSAVSYALNRQLSLEDLTKPVEEENIKVTMDDFLNALQEVIPAFGASTDDLERCRVHGMVDCGDRHKRIAQRAMLLVEQVKVSKGSPLVTCLLEGSSGSGKTALAATVGIESDFPYVKIVSAESILGLHESTKCAQIIKAYKSPLSVIILDDIERLLEYMAIGPRFSTLISQTLLVLLKRLPPKGKKLMVIGTTSELGFLDSVGFCDTFSVTYHVPTLNTDDAKKVLKQLNVFADEDVDSAAEALNDMPIKKLYTLIEMAAQGAQGGSAEAIFSGKEKINISHFYDCLQDNFLSH. 748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g04992 747 Gene3D - 501 668 IPR027417 -
Seca11g04992 747 FunFam Vesicle-fusing ATPase 405 492 - -
Seca11g04992 747 SUPERFAMILY ADC-like 14 99 IPR009010 -
Seca11g04992 747 FunFam vesicle-fusing ATPase isoform X1 501 668 - -
Seca11g04992 747 Pfam AAA+ lid domain 430 485 IPR041569 -
Seca11g04992 747 SMART AAA_5 259 406 IPR003593 GO:0016887
Seca11g04992 747 SMART AAA_5 539 673 IPR003593 GO:0016887
Seca11g04992 747 Pfam ATPase family associated with various cellular activities (AAA) 544 653 IPR003959 GO:0005524|GO:0016887
Seca11g04992 747 Pfam ATPase family associated with various cellular activities (AAA) 263 403 IPR003959 GO:0005524|GO:0016887
Seca11g04992 747 Gene3D - 99 198 - -
Seca11g04992 747 FunFam Vesicle-fusing ATPase 100 198 - -
Seca11g04992 747 ProSitePatterns AAA-protein family signature. 374 392 IPR003960 GO:0005524|GO:0016887
Seca11g04992 747 CDD RecA-like_NSF-SEC18_r1-like 226 402 - -
Seca11g04992 747 SMART CDC48_N_2 14 99 IPR003338 -
Seca11g04992 747 Gene3D - 405 492 - -
Seca11g04992 747 FunFam Vesicle-fusing ATPase protein 12 96 - -
Seca11g04992 747 Gene3D - 213 404 IPR027417 -
Seca11g04992 747 SUPERFAMILY Cdc48 domain 2-like 99 197 IPR029067 -
Seca11g04992 747 PANTHER VESICULAR-FUSION PROTEIN NSF 12 742 IPR039812 GO:0016887|GO:0035494
Seca11g04992 747 FunFam Vesicular-fusion ATPase SEC18 215 405 - -
Seca11g04992 747 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 237 502 IPR027417 -
Seca11g04992 747 Gene3D - 10 96 - -
Seca11g04992 747 Pfam Cell division protein 48 (CDC48), domain 2 123 177 IPR004201 -
Seca11g04992 747 CDD AAA 533 647 - -
Seca11g04992 747 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 505 710 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g04992 Seca-Chr11 142650537 142663471 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g04992 159 478 Calmodulin-binding Proteins AT3G56690 29.969 9.38e-30 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g04992 K06027 - gmx:100779259 1258.05