Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g04979 ATGGTTTGTGGTTCTTGTCGCCGCCTTCTCTCATATCCACAAGGTGCCAAACATGTCAAATGTTCGTGCTGTCAGACAGTTAATATTGTATTAGAAGCTGATCAGGTTGGGCAAGTTAAGTGTGGAAATTGTGCGATATTGCTAATGTACCCATTTGGTGCTTCACAAGTTAGGTGTTCCTCATGCCGGTTTGTGACAGAAATTGGGGCACACAACAAGCGGCCCCCATGGTCTGTACAGCAAAAGAAACCAACTCCTACCAAAACTGGTTGTTAG 276 0.4493 MVCGSCRRLLSYPQGAKHVKCSCCQTVNIVLEADQVGQVKCGNCAILLMYPFGASQVRCSSCRFVTEIGAHNKRPPWSVQQKKPTPTKTGC. 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g04979 91 NCBIfam zinc finger domain, LSD1 subclass 38 66 IPR005735 -
Seca11g04979 91 NCBIfam zinc finger domain, LSD1 subclass 1 30 IPR005735 -
Seca11g04979 91 PANTHER PROTEIN LSD1 1 88 IPR040319 -
Seca11g04979 91 Pfam LSD1 zinc finger 3 27 IPR005735 -
Seca11g04979 91 Pfam LSD1 zinc finger 41 65 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g04979 Seca-Chr11 142387752 142390350 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Seca11g04979 zf-LSD1 4.5e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g04979 - - gmx:100780865 189.889