Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g04973 ATGAAAGCATTGCCTCCTATTAAAATCTTTAGAGGAGAAAACACTACAGGGTTCCAATGTGATTGTCCTATTTGCAAGGAAGAATTCAAGAATGGGGAGTTGATTCAACCTTTTAGAGTGTGCCTACATGAATTCCATTCGTCTTGCATTAACTCTTGGTTACATGGTGGAAACATTACTTGTCCTGTTTTTCATAGGAATTTGCTAGCAACTAATCTCTCCTTAAGGTACGTATGA 237 0.3755 MKALPPIKIFRGENTTGFQCDCPICKEEFKNGELIQPFRVCLHEFHSSCINSWLHGGNITCPVFHRNLLATNLSLRYV. 79
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g04973 78 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 4 63 - -
Seca11g04973 78 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 72 IPR013083 -
Seca11g04973 78 ProSiteProfiles Zinc finger RING-type profile. 22 65 IPR001841 -
Seca11g04973 78 Pfam Zinc finger, C3HC4 type (RING finger) 22 63 - -
Seca11g04973 78 SUPERFAMILY RING/U-box 17 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g04973 Seca-Chr11 142326832 142327068 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g04973 22 63 C3H Transcription Factor Family AT4G00305 38.095 2.66e-09 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g04973 - - aprc:113865236 94.7449