Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g04961 ATGGCACCAAATACAAAAGTAGTAGCGGCCTATCGTGCAATGGCAAATCTTGGAATTCATGAATCAAAAGTGAAACTAGTATTGAAGAAACTACTTAAATTGTATGATAAAAACTGGGAACTTATTGAAGAAGAGAATTATAGGGCTCTTGCAGATGCTATATTTGAGGAGGACGAAAACAAGCCTATGGCGGTTGAAATGTCTTTTGGCTTGTCAAACATCCAGGAAGGGGGGGCAGATGATGAAGAAGCTCATATGCATGATGAGCCATTGCAACCTTTGAAGAGGTTGGGTTTAAGAAGCCAAGAGGTTCAATCTTCACGCCTTCTGACTAGTTGTGGCCCCAGCTCTGCTGCCTATCCATTGAAAACAACTAAATTAGAAAATGGCACAATACCTCAAAGTAATTTCAGACCGCAGCCTCAAAGCACAACAGTGTTACCTGATGGAAATGCAAGGATTGAAGCGCATCAAGTTCCACCACGAGATGCCATTGTTGACAAGGGAAAGCAACCTGTATCACCTCAAGATACTCCCAGAGGAAGAAGATCTATATCTGACAGAACTACTCTTGCAGTGCCATTTAAAGAACCATCAGTCAAACCAGGAGCCTCTCTATCATCAAAAAACAAAATGCCTCATTCTTACACTTTTATCAAGCCCAAGGATGAGCCTGTTGATGATATACTAGATTATGAAGTTCCCTTTGCAGTGATTCATCCTGAACCATCAAGTGGAAGAGACTCTTCAATGAAAAATGATTCAGTTGGTTTGCAAGATGACCATGACATTGTGGCATCACAAGGCAGAGGTGAAGATGGTGAAGGTGTAGATATTCTTCCTTCCTCAAATGAAGAAACGGCTTCTAATGTAGAGCTAACCCCATCTTCTATGGGAGAGGAAGGACCTGTGGAGATAACACTACCTGTTGATAGTTCAAAGGAGTCTGGGGCAAATGGAACACTAATTGTCAGGGGAAAAAAAGATTTGGTCATGCAATCTTGCGTTTCAAATGGATCAATCAGTGTTATGTCTTCTCCTACCCTGGTTACACCTCAAGTTCCTGATTCTTCACCCGACTGGAGTGGTCTGGATGATACTGCACAAGGTTCCGTGAAGGCTGGGATGAATGATTTCTTGGAAAGTGATGGCAGGAATGAGTTAGAGATACCTTCAGTGAATGCTCCAAAGCATCAGCCTGCAATTGGTGATATAAGGGCTATTTGTGATGTTAATGACATAACAAAGGGAGAAGAAAGGGTGAAAATTTCATGGGTGAATAACAGTACTAATGATTCCCCAACATCCTTTCACTACATACCAAGAAACCTTGTGTTCAAAGATGCATATGTTAATTTTTCACTATCTCGAATCAGGAATGAGGATTGTTGTTCTACTTGTATGGGCAATTGTGTCTTGTCATCTAAACCATGTTCATGCGCAAATAAAACTGGGGGTGAATTTGCTTACACTGCTCAAGGCCTACTAAAGGAAGAGTTCTTGGATGAGTGTATTGCCATTATCCAGGACCCTCAAAATTATTTTTATTGCAAAGACTGCCCGCTTGAAAGATCAAAGAGTGATGATTGTTTAGAACCATGTAAAGGACACTTGAAGAGGAAGTTTATTAAAGAGTGTTGGAGTAAATGTGGTTGTGGTAAACAATGTGGCAATCGGGTTGTGCAACGTGGAATTACTTGCAACTTGCAGGTGTTTTTAACTTCAGAAGGAAAAGGGTGGGGTCTTCGTACCTTAGAGGATCTTCCAAAAGGTGCATTTATTTGTGAGTTTGTTGGAGAAATTTTTACTGTCAAAGAGTTGCATGAGAGGAACTTGAAATATCCCAAAAATGGGAAATTTACATACCCAATTTTATTGGATGCCGATTGGGGTTCTGGAGCGGTGAAGGATAATGAAGCTCTTTGCTTATATGCAGCAACATTTGGAAATGTTGCTAGGTTTATTAACCACAGATGTTTAGATGCAAACTTGATTGAAATCCCAGTTGAAGTTGAGGGCCCAACTCATCACTACTATCATTTTGCCTTCTTCACATCCAGGAAAATAGCAGCACAGGAAGAGCTCACTTGGGATTATGGCATCAACTTTGATGATCATGACCAACTAGTTGAGTTGTTCCAGTGCAAATGTGGCAGTAAATTCTGCAGGAATATGAAGCGATCAAATAGTAAGTTCAACCTTCCATTTGTGTAA 2214 0.4065 MAPNTKVVAAYRAMANLGIHESKVKLVLKKLLKLYDKNWELIEEENYRALADAIFEEDENKPMAVEMSFGLSNIQEGGADDEEAHMHDEPLQPLKRLGLRSQEVQSSRLLTSCGPSSAAYPLKTTKLENGTIPQSNFRPQPQSTTVLPDGNARIEAHQVPPRDAIVDKGKQPVSPQDTPRGRRSISDRTTLAVPFKEPSVKPGASLSSKNKMPHSYTFIKPKDEPVDDILDYEVPFAVIHPEPSSGRDSSMKNDSVGLQDDHDIVASQGRGEDGEGVDILPSSNEETASNVELTPSSMGEEGPVEITLPVDSSKESGANGTLIVRGKKDLVMQSCVSNGSISVMSSPTLVTPQVPDSSPDWSGLDDTAQGSVKAGMNDFLESDGRNELEIPSVNAPKHQPAIGDIRAICDVNDITKGEERVKISWVNNSTNDSPTSFHYIPRNLVFKDAYVNFSLSRIRNEDCCSTCMGNCVLSSKPCSCANKTGGEFAYTAQGLLKEEFLDECIAIIQDPQNYFYCKDCPLERSKSDDCLEPCKGHLKRKFIKECWSKCGCGKQCGNRVVQRGITCNLQVFLTSEGKGWGLRTLEDLPKGAFICEFVGEIFTVKELHERNLKYPKNGKFTYPILLDADWGSGAVKDNEALCLYAATFGNVARFINHRCLDANLIEIPVEVEGPTHHYYHFAFFTSRKIAAQEELTWDYGINFDDHDQLVELFQCKCGSKFCRNMKRSNSKFNLPFV. 738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g04961 737 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 733 IPR025776 -
Seca11g04961 737 MobiDBLite consensus disorder prediction 266 319 - -
Seca11g04961 737 FunFam SET-domain containing protein lysine methyltransferase family protein 414 725 - -
Seca11g04961 737 MobiDBLite consensus disorder prediction 282 296 - -
Seca11g04961 737 Pfam Ubiquitin-binding WIYLD domain 5 60 IPR018848 -
Seca11g04961 737 MobiDBLite consensus disorder prediction 165 184 - -
Seca11g04961 737 ProSiteProfiles SET domain profile. 567 700 IPR001214 GO:0005515
Seca11g04961 737 Pfam Pre-SET motif 414 559 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Seca11g04961 737 CDD SET_SETDB-like 436 700 - -
Seca11g04961 737 Gene3D - 1 60 IPR043017 -
Seca11g04961 737 SMART preset_2 411 551 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Seca11g04961 737 SUPERFAMILY SET domain 421 723 IPR046341 -
Seca11g04961 737 SMART set_7 567 706 IPR001214 GO:0005515
Seca11g04961 737 Gene3D SET domain 414 725 IPR046341 -
Seca11g04961 737 Pfam SET domain 579 700 IPR001214 GO:0005515
Seca11g04961 737 ProSiteProfiles Pre-SET domain profile. 463 564 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Seca11g04961 737 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 1 730 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g04961 Seca-Chr11 141903862 141909014 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g04961 318 723 Su(var)3-9 homologs AT1G73100 25.977 1.57e-28 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Seca11g04961 Pre-SET 1.4e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g04961 - - gmx:100809678 1023.46