Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g04949 ATGTTGCAGGCAGAAGATACAGCATTATCTGTTTTGCATATTCAATATCCCGAATGGCCTGACCATGGAGTTCCAAACAATATATTTTCTGTGCGTGAAATTTTGAAAAGATACCACTTACCACCAGAGCTTGGCCCAATAGTGGTGCACTGCAGTGCAGGTGTTGGTAGAACGGGAACCTACTGCACAATTCACAACACAATTCAGAGAATACTTGCTGGTGATATGTCTGCTGTAGATATTGCTAACACAATAGTTGTGTTCAGGTTCCTCCAAAATACTCCAATACTCCAACCTGTTTCATGTCTTCTTTATGCTGTCCTCTTCTTTATGCGCGCACCAGCCACCCGAGACAAATTAAACTAG 366 0.4235 MLQAEDTALSVLHIQYPEWPDHGVPNNIFSVREILKRYHLPPELGPIVVHCSAGVGRTGTYCTIHNTIQRILAGDMSAVDIANTIVVFRFLQNTPILQPVSCLLYAVLFFMRAPATRDKLN. 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g04949 121 SMART ptp_7 10 110 IPR003595 -
Seca11g04949 121 ProSiteProfiles PTP type protein phosphatase domain profile. 1 98 IPR000242 GO:0004725|GO:0006470
Seca11g04949 121 Gene3D Protein tyrosine phosphatase superfamily 2 105 IPR029021 -
Seca11g04949 121 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 5 93 IPR029021 -
Seca11g04949 121 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 25 89 IPR000387 GO:0016311|GO:0016791
Seca11g04949 121 PANTHER RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE 9 89 - -
Seca11g04949 121 PRINTS Protein tyrosine phosphatase signature 46 64 IPR000242 GO:0004725|GO:0006470
Seca11g04949 121 PRINTS Protein tyrosine phosphatase signature 79 94 IPR000242 GO:0004725|GO:0006470
Seca11g04949 121 PRINTS Protein tyrosine phosphatase signature 9 26 IPR000242 GO:0004725|GO:0006470
Seca11g04949 121 ProSitePatterns Tyrosine specific protein phosphatases active site. 49 59 IPR016130 GO:0016311|GO:0016791
Seca11g04949 121 Pfam Protein-tyrosine phosphatase 7 87 IPR000242 GO:0004725|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g04949 Seca-Chr11 141184141 141186209 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g04949 3 89 Protein tyrosine phosphatase (PTP) family AT1G71860 73.864 1.30e-45 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g04949 - - pvu:PHAVU_007G087900g 157.532