LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca11g04943	ATGGACCCAAGTCACCCAACACCCCGAATATTAACCCATGAAGACATTTTTCGAATTCATCTGTATGATTATTTCAGGAAGAGGGGATTTAACCAAACTGCAGAAGCTTTCCGAAGAGAAGGAGAAGTCACTAAACAACCTTCCGCTGATCATGACGTCCCACAAGGAATGCTGCGCGACTTTTGGGGTTTATTCCATGACATATATTTCTCCAATCAGTTACCATTACCAGCATCCTCCAATCAGGCCCCAGACCTTATTGGTAGTATTATGAATATCCCTCGAATGGTTCGGGATGGATATTCAATGCATTTTCTTGCAGGTTTTCCAAGCCATGACAGGCTTGTGTCCTGCCAGTTTTCATCCGATGGAAGTATTTTGGCAAGTGGTGGGCTTGGAAAGAAGGTTTTCATTTGCTACACGAACACTTGTGATTCTGTTACTACATTAGAATCACATCTTGATCCCATCTCAGAAGTTTGTTTTCAACCAGGTTCAGCTCTACTTGCAACTGCTTCCTATGATAAGACTGTAAAACTATGGGATGCAACCAAACCTGGCAGATTATTGTACAATCTTATTGGGCATAATGGGTGGGTAAAGTCATTGGACTTCCACCCCATGGAAAGGGAAGTTCTTTGCTCCTCTGATAGCTTTGATGTAATTGAAATGTGGAATGTCAATCAGGGTGTTAGGATAAAAAACGTTATGGCAGGTGGACAAATAATTAGGTTTCAGCCACGATTTGGGAGATTTTTGGCAGTTGCTAATGGAAAGATCATCAACATATTTGATGTTCAGATTTGGAGAATTCAAGGCCGTCTAGAGGGACATGTCAATGATGTTCTTGCCATGTGTTGGGATTCAACTGGACAAATGATTGCCTCTGTCAGTGAAGACTGTGCACGTGTCTGGTCGGTTGTGGTGTGTGGATATTGCATGCATCAATTGCCATCGAATGGGAAGAGGTTTCAGTCAATTGTATTCCATCCTAGATACCCTAATGTCTTAGTTATTGGTGGCTTTCAGTGCATGGAAGTGTGGATTCCTGAGACCGGGGATATATATAGTATTCATGCCCACAATGGATCAGTCAGTGGACTAGCAGCTTCAACGCAAACCCAATGTATTGCCTCAGTTAGCAGTGATGAGTGTGTGAAAATTTGGAAATGA	1173	0.4237	MDPSHPTPRILTHEDIFRIHLYDYFRKRGFNQTAEAFRREGEVTKQPSADHDVPQGMLRDFWGLFHDIYFSNQLPLPASSNQAPDLIGSIMNIPRMVRDGYSMHFLAGFPSHDRLVSCQFSSDGSILASGGLGKKVFICYTNTCDSVTTLESHLDPISEVCFQPGSALLATASYDKTVKLWDATKPGRLLYNLIGHNGWVKSLDFHPMEREVLCSSDSFDVIEMWNVNQGVRIKNVMAGGQIIRFQPRFGRFLAVANGKIINIFDVQIWRIQGRLEGHVNDVLAMCWDSTGQMIASVSEDCARVWSVVVCGYCMHQLPSNGKRFQSIVFHPRYPNVLVIGGFQCMEVWIPETGDIYSIHAHNGSVSGLAASTQTQCIASVSSDECVKIWK.	391

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca11g04943	390	Pfam	LisH	22	41	IPR006594	GO:0005515
	Seca11g04943	390	SMART	WD40_4	351	390	IPR001680	GO:0005515
	Seca11g04943	390	SMART	WD40_4	186	226	IPR001680	GO:0005515
	Seca11g04943	390	SMART	WD40_4	143	182	IPR001680	GO:0005515
	Seca11g04943	390	SMART	WD40_4	102	140	IPR001680	GO:0005515
	Seca11g04943	390	SMART	WD40_4	268	306	IPR001680	GO:0005515
	Seca11g04943	390	SMART	WD40_4	310	349	IPR001680	GO:0005515
	Seca11g04943	390	CDD	WD40	109	390	-	-
	Seca11g04943	390	SUPERFAMILY	WD40 repeat-like	112	390	IPR036322	GO:0005515
	Seca11g04943	390	ProSiteProfiles	LIS1 homology (LisH) motif profile.	22	45	IPR006594	GO:0005515
	Seca11g04943	390	ProSiteProfiles	Trp-Asp (WD) repeats profile.	150	182	IPR001680	GO:0005515
	Seca11g04943	390	ProSiteProfiles	Trp-Asp (WD) repeats circular profile.	150	182	-	-
	Seca11g04943	390	PANTHER	TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8	16	74	IPR044716	GO:0003714
	Seca11g04943	390	Gene3D	-	241	390	IPR015943	GO:0005515
	Seca11g04943	390	Gene3D	-	96	240	IPR015943	GO:0005515
	Seca11g04943	390	ProSiteProfiles	Trp-Asp (WD) repeats profile.	358	390	IPR001680	GO:0005515
	Seca11g04943	390	ProSiteProfiles	Trp-Asp (WD) repeats circular profile.	358	390	-	-
	Seca11g04943	390	Pfam	WD domain, G-beta repeat	146	182	IPR001680	GO:0005515
	Seca11g04943	390	Pfam	WD domain, G-beta repeat	271	305	IPR001680	GO:0005515

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca11g04943	Seca-Chr11	140974445	140976978	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca11g04943	82	307	U-box Gene Family	AT2G33340	23.431	1.64e-10	60.5

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca11g04943	-		-	psat:127101304	436.032