Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g04940 ATGGGTAGAGCTCCATCCTGTGACAAGGCCAACGTGAAGAAAGGACCTTGGTCTCCTGAAGAAGATGCTGCACTCAAAGCCTATATTGAAAAGAATGGAACTGGAGGTAATTGGATTGCTCTTCCTCAAAAAATTGATACTGGTTCATATATGCCATTAAGGTGA 165 0.4242 MGRAPSCDKANVKKGPWSPEEDAALKAYIEKNGTGGNWIALPQKIDTGSYMPLR. 55
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g04940 54 PANTHER OS09G0431300 PROTEIN 1 46 - -
Seca11g04940 54 CDD SANT 16 54 IPR001005 -
Seca11g04940 54 ProSiteProfiles Myb-like domain profile. 9 54 IPR001005 -
Seca11g04940 54 SUPERFAMILY Homeodomain-like 11 44 IPR009057 -
Seca11g04940 54 Gene3D - 6 54 - -
Seca11g04940 54 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 35 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g04940 Seca-Chr11 140741008 140743089 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g04940 1 45 MYB Transcription Factor Family AT3G49690 88.889 7.95e-25 90.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca11g04940 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g04940 K09422 - gmx:778083 97.8265