Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g04937 ATGTTTCCTGCAACTACCTCATCTCCCATTCCACTCACCCAGTTCCATTATCCACCACCTTATTTTGCACCATTTGATCTGAACCTTTCATATATGCATACATTTCGCCCTCACGGGTATCCTCTATATTCTTTTCCAATAGGGCAAAGCAGTGTTCCTTTTGGAATGATGAATTCTCAACCTCAAGGTTTCTCGTCTCAGCCAGTAAGGGAAGAAGATAACAAGATGATGGACGAATTCAAAATTGATAGGTCCCGGAGGAAACAAATCATACAAGAAAGACGAAGGAGTAGAAGTTCGACTTCCGAGGCCCCTTACATACCAGAATCAAATCAATTGCACACAAGGGGAGAACCTCTTACTTCTGAAGAGTCAAATTGGAGGATGGGAAAGCTCGAAGCAATTTTAACGAAGGAGTTGAAAAAGAGCGATGTTGGCACCCTAGGCCGCATTATTCTTCCAAAGAGGGAAGCCGAGGAAAAGCTTCCGCCTATATTGAGCAAGGATGGAATCGATATCGTCCTTCAAGATGTAAATTCTGACCAACGATGGAGCATGAAATACAAGTATTGGTCTAATAGTAGTAGTAGAATGTACATTCTTGAAAACACAGGGGACTTTGTGAACCATCAAAGATTACAACTAGGAGATTATATAACTCTGTGTGAGGATGAATTTAAAAACCTGCGGTATATAATAGCAAAAAAGGAAAGAAATCCAGAAGCACCTGAGCCTTCATTAAACTTCATGCAAGCACCTGCACTTGATCCACAACAAGCAGAACCATCTATGACCTTTTCAATAGAAGAGCCTACAGAAGAAGAATTAGTTGCTGATAGCTTTTTGAACCTGTGTGATGGTGGGGATTCTTCAACGGGGAAAGAAAAAAACTAA 894 0.4094 MFPATTSSPIPLTQFHYPPPYFAPFDLNLSYMHTFRPHGYPLYSFPIGQSSVPFGMMNSQPQGFSSQPVREEDNKMMDEFKIDRSRRKQIIQERRRSRSSTSEAPYIPESNQLHTRGEPLTSEESNWRMGKLEAILTKELKKSDVGTLGRIILPKREAEEKLPPILSKDGIDIVLQDVNSDQRWSMKYKYWSNSSSRMYILENTGDFVNHQRLQLGDYITLCEDEFKNLRYIIAKKERNPEAPEPSLNFMQAPALDPQQAEPSMTFSIEEPTEEELVADSFLNLCDGGDSSTGKEKN. 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g04937 297 CDD B3_DNA 135 221 IPR003340 GO:0003677
Seca11g04937 297 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 84 256 IPR044800 GO:0003700
Seca11g04937 297 MobiDBLite consensus disorder prediction 101 122 - -
Seca11g04937 297 SUPERFAMILY DNA-binding pseudobarrel domain 135 234 IPR015300 -
Seca11g04937 297 ProSiteProfiles B3 DNA-binding domain profile. 136 237 IPR003340 GO:0003677
Seca11g04937 297 SMART B3_2 136 237 IPR003340 GO:0003677
Seca11g04937 297 MobiDBLite consensus disorder prediction 84 100 - -
Seca11g04937 297 Gene3D - 126 243 IPR015300 -
Seca11g04937 297 MobiDBLite consensus disorder prediction 84 125 - -
Seca11g04937 297 Pfam B3 DNA binding domain 137 226 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g04937 Seca-Chr11 140718676 140720705 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g04937 16 233 B3 DNA Binding Superfamily AT1G28300 34.764 8.70e-35 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca11g04937 B3 1.8e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g04937 K09287 - gmx:102662409 169.474