Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g04936 ATGGATTGTGTTTCTTCATCGTGTTCTGCACAAACAACTGACCCACCAACCTCCTCCACAGCTACCTCTCGAATTGTTTCATCGCCATCCTCCTCTCAAATGTTTCCTGCAACTACCTCGTCTCCCCTTCCAGTCACCCAGTTCCATTATCCACCACCTTATTTTGCACCATTTGATCTGAACCTTTCATATATGCATACATTTCGCCCTCACGGGTATCCTCTATATTCTTTTCCAATAGGGCAAAGCAGTGTTCCTTTTGGAATGATGAATTCTCAACCTCAAGGTTTCTCGTCTCAGCCAGTAAGGGAAGAAGATAACAAGATGATGGACGAATTCAAAATTGCTAGGGCCCAGAGGAAGCAAATCATACAAGAAAGACGAAGGAGTAGAAGTTCGACTTCTGAGGCCCCTTACATACCAGAATCAAATCAATTGCACACAAGGGGAGAACCTCTTACTTCTGAAGAGTCAAATTGGAGGATGGGAGTCACCCAAAATATAAGATCCTTAGATGTTTTCAACTCAGATGGCAAGAAGCTCGAAGCAATTTTAACGAAGGAGTTGAAAAAGAGCGATGTTGGCACCCTAGGCCGCATTATTCTTCCGAAGAGGGAAGCCGAGGAAAAGCTTCCGCCTATATTGAACAAGGATGGAATCGATATCGTCCTTCAAGATGTAAATTCTGACCAACGATGGAGCATGAAATACAAGTATTGGTCTAATAGTAGTAGTAGAATGTACATTCTTGAAAACACAGGGGACTTTGTGAACCATCACAGATTACAACTAGGAGATTATATAACTCTGTATGAGGATGAATTTAAAAACCTGGTCAGTTTTTTCTTTCCTGTTACACAATTTAATAAATATTAA 876 0.4121 MDCVSSSCSAQTTDPPTSSTATSRIVSSPSSSQMFPATTSSPLPVTQFHYPPPYFAPFDLNLSYMHTFRPHGYPLYSFPIGQSSVPFGMMNSQPQGFSSQPVREEDNKMMDEFKIARAQRKQIIQERRRSRSSTSEAPYIPESNQLHTRGEPLTSEESNWRMGVTQNIRSLDVFNSDGKKLEAILTKELKKSDVGTLGRIILPKREAEEKLPPILNKDGIDIVLQDVNSDQRWSMKYKYWSNSSSRMYILENTGDFVNHHRLQLGDYITLYEDEFKNLVSFFFPVTQFNKY. 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g04936 291 SUPERFAMILY DNA-binding pseudobarrel domain 184 283 IPR015300 -
Seca11g04936 291 ProSiteProfiles B3 DNA-binding domain profile. 185 289 IPR003340 GO:0003677
Seca11g04936 291 SMART B3_2 185 285 IPR003340 GO:0003677
Seca11g04936 291 MobiDBLite consensus disorder prediction 134 160 - -
Seca11g04936 291 MobiDBLite consensus disorder prediction 1 38 - -
Seca11g04936 291 CDD B3_DNA 184 282 IPR003340 GO:0003677
Seca11g04936 291 Gene3D - 174 283 IPR015300 -
Seca11g04936 291 MobiDBLite consensus disorder prediction 122 160 - -
Seca11g04936 291 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 117 273 IPR044800 GO:0003700
Seca11g04936 291 Pfam B3 DNA binding domain 186 282 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g04936 Seca-Chr11 140708415 140709931 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g04936 49 278 B3 DNA Binding Superfamily AT1G28300 36.596 2.49e-37 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca11g04936 B3 2.5e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g04936 K09287 - gmx:102662409 182.185