Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g04934 ATGGACTGTGTTTCTTCATCGTGTTCTGCACAAACAACTGACCCACCAACCTCCTCCACAACTACCTCTCGAATTGTTTCATCGCCATCCTCCTCTCAAATGTTTCCTGCAACTACCTCGTCTCCCCTTCCAGTCACCCAGTTCCATTATCCACCACCTTATTTTGCACCATTTGATCTGAACCTTTCATATATGCATACATTTCGCCCTCACGGGTATCCTCTATATTCTTTTCCAATAGGGAAAAGCAGTGTTCCTTTTGGAATGATGAATTCTCAACCTCAAGGTTTCTCGTCTCAGCCAATAAGGAAAGAAGATAACAAGATGATGGACGAATTCAAAATTGCTAGGGCCCAAAGGAAGCAAATCATACAAGAAAGACGAAGGAGTAGAAGTTCGACTTCTGAGGCCCCTTACATACCAGAATCAAATCAATTGCACACAAGGGGAAAACCTCTTACTTCTGAAGAGTCAAATTGGAGGATGGGAGTCACCCAAAATATAAGCTCCTTAGATGTTTTCACCTCAGATGGCAAGAAGCTCGAAGCAATTTTAACGAAGGAGTTGAAAAAGAGCGATGTTGGCACCCTAAGCCGCATTATTCTTCCGAAGAGGGAAGCCGAGGAAAAGCTTCCGCCTATATTGAGCAAGGATGGAATCGATATCGTCCTTCAAGATGTAAATTCTGACCAACGATGGAGCATGAAATACAAGTATTGGTCTAATAGTAGTAGTAGAATGTACATTCTTGAAAACACAGGGGACTTTGTGAACCATCACAGATTACAACTAGGAGATTATATAACTCTGTATGAGGATGAATTTAAAAACCTGTATATAATAGCAAAAAAGGAGAGAAATCCAGAAGCACCTGAGCCTTCATTAAACTTCATGCAAGCACCTGCACTTGATCCACAACAAGCAGGACCATCTATGACCTTTTCAATAGAAGAGCCTACAGAAGAAGAATTAGTTGCTGATAGCTTTTTGAACCTGTGTGATGGTGGGGATTCTTCAACGGGGAAAGAAAAAAACTAA 1038 0.4143 MDCVSSSCSAQTTDPPTSSTTTSRIVSSPSSSQMFPATTSSPLPVTQFHYPPPYFAPFDLNLSYMHTFRPHGYPLYSFPIGKSSVPFGMMNSQPQGFSSQPIRKEDNKMMDEFKIARAQRKQIIQERRRSRSSTSEAPYIPESNQLHTRGKPLTSEESNWRMGVTQNISSLDVFTSDGKKLEAILTKELKKSDVGTLSRIILPKREAEEKLPPILSKDGIDIVLQDVNSDQRWSMKYKYWSNSSSRMYILENTGDFVNHHRLQLGDYITLYEDEFKNLYIIAKKERNPEAPEPSLNFMQAPALDPQQAGPSMTFSIEEPTEEELVADSFLNLCDGGDSSTGKEKN. 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g04934 345 Pfam B3 DNA binding domain 186 276 IPR003340 GO:0003677
Seca11g04934 345 MobiDBLite consensus disorder prediction 134 159 - -
Seca11g04934 345 MobiDBLite consensus disorder prediction 1 38 - -
Seca11g04934 345 MobiDBLite consensus disorder prediction 122 159 - -
Seca11g04934 345 SMART B3_2 185 286 IPR003340 GO:0003677
Seca11g04934 345 ProSiteProfiles B3 DNA-binding domain profile. 185 286 IPR003340 GO:0003677
Seca11g04934 345 CDD B3_DNA 184 281 IPR003340 GO:0003677
Seca11g04934 345 Gene3D - 174 292 IPR015300 -
Seca11g04934 345 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 118 302 IPR044800 GO:0003700
Seca11g04934 345 SUPERFAMILY DNA-binding pseudobarrel domain 184 281 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g04934 Seca-Chr11 140686991 140689119 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g04934 175 280 B3 DNA Binding Superfamily AT1G28300 57.547 4.45e-37 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca11g04934 B3 3.1e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g04934 K09287 - gmx:102662409 188.348