Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g04933 ATGGACTGTGTTTCTTCATCGTGTTCTGCACAAACAATTGACCCGCCAACCTCCTCCACAGCTACCTCTCGAATTGTTTCATCGCCATCCTCCTCTCAAATGTTTCCTGCAACTACCTCGTCTCCCCTTCCAGTCACCCAGTTCCATTATCCACCACCTTATTTTGCACCATTTGATCTGAACCTTTCATATATGCATACATTTCGCCCTCACGGGTATCCTCTATATTCTTTTCCAATAGGGCAAAGCAGTGTTCCTTTTGGAATGATGAATTCTCAACCTCAAGGTTTCTCGTCTCAGCCAGTAAGGGAAGAAGATAACAAGATGATGGACGAATTCAAAATTGCTAGGGCCCAGAGGAAGCAAATCATACAAGAAAGACGAAGGAGTAGAAGTTCGACTTCTGAGGCCCCTTACATACCAGAATCAAATCAATTGCACACAAGGGGAGAACCTCTTACTTCTGAAGAGTCAAATTGGAGGATGGGAGTCACCCAAAATATAAGCTCCTTAGATGTTTTCACCTCAGATGGCAAGAAGCTCGAAGCAATTTTAACGAAGGAGTTGAAAAAGAGCGATGTTGGCACCCTAAGCCGCATTATTCTTCCGAAGAGGGAAGCCGAGGAAAAGCTTCCGCCTATATTGAGCAAGGATGGAATCGATATCGTCCTTCAAGATGTAAATTCTAACCAACGATGGAGCATGAAATACAAGTATTGGTCTAATAGTAGTAGTAGAATGTACATTCTTGAAAACACAGGGGACTTTGTGAACCATCACAGATTACAACTAGGAGATTATATAACTCTGTATGAGGATGAATTTAAAAACCTGTATATAATAGCAAAAAAGGAGAGAAATCCAGAAGCACCTGAGCCTTCATTAAACTTCATGCAAGCACCTGCACTTGATCCACAACAAGCAGAACCATCTATGACCTTTTCAATAGAAGAGACTACAGAAGAAGAATTAGTTGCTGATAGCTTTTTGAACCTGTGTGATGGTGGGGATTCTTCAACGGGGAAAGAAAAAAACTAA 1038 0.4171 MDCVSSSCSAQTIDPPTSSTATSRIVSSPSSSQMFPATTSSPLPVTQFHYPPPYFAPFDLNLSYMHTFRPHGYPLYSFPIGQSSVPFGMMNSQPQGFSSQPVREEDNKMMDEFKIARAQRKQIIQERRRSRSSTSEAPYIPESNQLHTRGEPLTSEESNWRMGVTQNISSLDVFTSDGKKLEAILTKELKKSDVGTLSRIILPKREAEEKLPPILSKDGIDIVLQDVNSNQRWSMKYKYWSNSSSRMYILENTGDFVNHHRLQLGDYITLYEDEFKNLYIIAKKERNPEAPEPSLNFMQAPALDPQQAEPSMTFSIEETTEEELVADSFLNLCDGGDSSTGKEKN. 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g04933 345 SMART B3_2 185 286 IPR003340 GO:0003677
Seca11g04933 345 Pfam B3 DNA binding domain 186 276 IPR003340 GO:0003677
Seca11g04933 345 ProSiteProfiles B3 DNA-binding domain profile. 185 286 IPR003340 GO:0003677
Seca11g04933 345 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 117 304 IPR044800 GO:0003700
Seca11g04933 345 MobiDBLite consensus disorder prediction 1 38 - -
Seca11g04933 345 SUPERFAMILY DNA-binding pseudobarrel domain 184 281 IPR015300 -
Seca11g04933 345 MobiDBLite consensus disorder prediction 134 161 - -
Seca11g04933 345 CDD B3_DNA 184 281 IPR003340 GO:0003677
Seca11g04933 345 Gene3D - 174 292 IPR015300 -
Seca11g04933 345 MobiDBLite consensus disorder prediction 122 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g04933 Seca-Chr11 140674813 140676941 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g04933 49 280 B3 DNA Binding Superfamily AT1G28300 36.709 2.20e-37 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca11g04933 B3 1.9e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g04933 K09287 - gmx:102662409 191.045