Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g04926 ATGGAGCAAAGAGGAGAAGGTGGAGAAGGAGGAAACATGAATGAACAACCTCAGCCTCCACCACAACAACCTATGCAAAACTATAGATGCCCACGTTGCAATTCCCTGGATACCAAGTTCTGCTATTACAACAATTATAGCCTGTTGCAACCTCGACATTTTTGCAAAGCGTGTAAAAGGTATTGGACACAAGGTGGAACTTTCAAGAACATACCGATTGGTGGTAATTCCCGCAAAGGAAAATGTGCCAAAACTTCTTCTTCATCTTCTTGGCCACAACCACAACCACTGCCTCAGGAAGTGGTTCATGTTCAAAACCATTCAAATATGACACCATTGATTAGGCTCGTAAGGCCTTCACTACCCATGGTTGTTCACTCAATCGGCCCCTATTATCAAGGTGGTGGTGGGTATTTATCTTCTCTTTCAACTGTTCAGTCACTAAACCCAACACAACCATTCAATCAGTCTCTGAATGGTAATGTTGTGGGTTCTTCTAATTTGTCTCTGCCATCTAGCTTCAATTATGCTTCTGTGGGCTCACAAAATCACCACTCAAGCCAAATTCAACCTTCACAATTCTATCAGATGGAAATTAGAAGTGGGATAGGATCTCTATATCATGTAGGACAAGGTTTGATACCATTAAGTGTGACTAATAACAGTACTGCACTTCACCCTGATCATAGAGCTTCTAACACCTCTTATTAG 711 0.4177 MEQRGEGGEGGNMNEQPQPPPQQPMQNYRCPRCNSLDTKFCYYNNYSLLQPRHFCKACKRYWTQGGTFKNIPIGGNSRKGKCAKTSSSSSWPQPQPLPQEVVHVQNHSNMTPLIRLVRPSLPMVVHSIGPYYQGGGGYLSSLSTVQSLNPTQPFNQSLNGNVVGSSNLSLPSSFNYASVGSQNHHSSQIQPSQFYQMEIRSGIGSLYHVGQGLIPLSVTNNSTALHPDHRASNTSY. 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g04926 236 Pfam Dof domain, zinc finger 26 81 IPR003851 GO:0003677|GO:0006355
Seca11g04926 236 ProSitePatterns Zinc finger Dof-type signature. 30 66 IPR003851 GO:0003677|GO:0006355
Seca11g04926 236 ProSiteProfiles Zinc finger Dof-type profile. 28 82 IPR003851 GO:0003677|GO:0006355
Seca11g04926 236 MobiDBLite consensus disorder prediction 80 96 - -
Seca11g04926 236 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 18 180 IPR045174 GO:0003700|GO:0006355
Seca11g04926 236 MobiDBLite consensus disorder prediction 1 28 - -
Seca11g04926 236 MobiDBLite consensus disorder prediction 76 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g04926 Seca-Chr11 140561568 140562278 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g04926 14 100 C2C2-Dof Transcription Factor Family AT5G60200 51.579 3.16e-28 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Seca11g04926 zf-Dof 9e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g04926 - - lang:109349998 195.667